CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88251
EER93297
EES16051
KXG26318
KXG33474
KXG37583
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15450.1	KXG26318	AT2G23420.1	21798944
AT3G15450.1	OQU90665	AT2G23420.1	21798944
AT3G15450.1	EER88251	AT3G62800.1	21798944
AT3G15450.1	EES16051	AT3G62800.1	21798944
AT3G15450.1	KXG33474	AT3G62800.1	21798944
AT3G15450.1	EER93297	AT5G43830.1	21798944
AT3G15450.1	KXG37583	AT5G43830.1	21798944
AT4G27450.1	EER93297	AT5G43830.1	21798944
AT4G27450.1	KXG37583	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026632_P001	Maize	extracellular	88.97	88.3
Os04t0679400-01	Rice	cytosol	81.75	83.33
TraesCSU01G021600.1	Wheat	cytosol	80.23	79.92
TraesCS2D01G600100.1	Wheat	cytosol	79.09	78.79
TraesCS2A01G586500.1	Wheat	cytosol	79.09	78.79
GSMUA_Achr10P...	Banana	cytosol	68.44	67.67
GSMUA_Achr3P14300_001	Banana	cytosol	67.68	67.17
KRH27213	Soybean	endoplasmic reticulum	63.5	65.75
VIT_19s0014g03130.t01	Wine grape	cytosol	63.5	65.49
KRH22129	Soybean	nucleus	63.12	65.35
GSMUA_AchrUn_...	Banana	cytosol	58.94	64.05
KRH26075	Soybean	endoplasmic reticulum	60.84	62.99
AT4G27450.1	Thale cress	cytosol	59.7	62.8
Bra026348.1-P	Field mustard	cytosol	59.7	62.8
CDX89248	Canola	cytosol	59.7	62.8
CDY29312	Canola	cytosol	59.32	62.4
CDY14279	Canola	cytosol	58.94	62.0
Bra010404.1-P	Field mustard	cytosol	58.94	62.0
CDX97384	Canola	cytosol	58.94	62.0
VIT_00s0586g00030.t01	Wine grape	cytosol	59.7	61.33
CDY53810	Canola	cytosol	58.94	61.26
Bra019002.1-P	Field mustard	cytosol	58.56	60.87
CDY26025	Canola	cytosol	58.17	60.47
Solyc12g013700.1.1	Tomato	cytosol	57.03	59.06
VIT_00s0561g00020.t01	Wine grape	cytosol	59.7	59.02
AT3G15450.1	Thale cress	cytosol	56.65	58.89
CDX97669	Canola	cytosol	55.89	58.1
Bra027243.1-P	Field mustard	cytosol	55.89	58.1
CDY56826	Canola	cytosol	55.51	57.71
PGSC0003DMT400033379	Potato	cytosol	55.51	57.71
KRH10823	Soybean	cytosol	54.75	57.37
KRH10843	Soybean	nucleus	54.75	57.37
CDY20112	Canola	cytosol	54.75	56.92
CDY61102	Canola	cytosol	17.87	56.63
Bra021110.1-P	Field mustard	cytosol	54.37	56.52
Solyc03g006490.2.1	Tomato	cytosol	54.37	56.52
PGSC0003DMT400057793	Potato	cytosol	54.75	56.47
KRH21498	Soybean	cytosol	53.61	56.18
Solyc02g078500.2.1	Tomato	unclear	54.37	56.08
KRH20474	Soybean	nucleus	53.23	54.47
CDY21841	Canola	plastid	41.44	54.23
HORVU2Hr1G118550.2	Barley	cytosol	49.43	53.06
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	17.87	52.22
CDY21375	Canola	cytosol	15.21	51.95
CDY07847	Canola	cytosol	16.73	51.76
KRH33539	Soybean	cytosol	30.42	49.69
Bra037807.1-P	Field mustard	cytosol	18.25	48.0
KRH63496	Soybean	cytosol	34.98	47.92
EER93297	Sorghum	cytosol	44.87	47.39
KRG89645	Soybean	cytosol	33.08	44.85
KXG37583	Sorghum	plastid	42.97	44.14
KRH50016	Soybean	cytosol, nucleus, plastid	52.09	43.63
EES09256	Sorghum	cytosol	39.16	43.28
KXG22952	Sorghum	cytosol, plastid	38.02	40.82
HORVU2Hr1G118570.2	Barley	cytosol	31.94	31.0

Protein Annotations

EnsemblPlants:EES13111	EnsemblPlantsGene:SORBI_3006G269200	EntrezGene:8085878	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF14	PFAM:PF12481	ProteinID:EES13111	ProteinID:EES13111.1
RefSeq:XP_002448783.1	SEG:seg	SMART:SM01172	SUPFAM:SSF56235	unigene:Sbi.2663	UniParc:UPI0001A875FB
UniProt:C5YAK8	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60188765..60190406

Molecular Weight (calculated)

27836.0 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.100

Length

263 amino acids

Sequence
(BLAST)

001: MLAIFQKQVA HAPQELNSPR GGAASNKPRN PDEILRDFHA AHPTNAISTS FSGGAALACV GPTSAGTGTG TGTYPRMFCG LDDIYCVFLG RLDNLSGLIR
101: QYGLCGRSTN EALLVIEAYR TLRDRGPYPA DQVVKDLAGA FAFVVFDNRS GAVFAALGGN GDGVPLYWGL AADGSAVISD DRDVVKRGCG KSYAPFPAGC
201: MFHSEGGLKS FEHPMNRLKA MPRVDSEGAM CGATFKVDTF TKINSMPRVG SATNWAAAWE DAI

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.