Factsheet for VIT_19s0014g03130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04160.t01
VIT_14s0036g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27450.1	VIT_05s0020g04160.t01	AT5G43830.1	21798944
AT4G27450.1	VIT_14s0036g00050.t01	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97384	Canola	cytosol	81.57	83.2
Bra010404.1-P	Field mustard	cytosol	81.18	82.8
Bra026348.1-P	Field mustard	cytosol	81.18	82.8
CDX89248	Canola	cytosol	81.18	82.8
CDY14279	Canola	cytosol	81.18	82.8
CDY29312	Canola	cytosol	81.18	82.8
AT4G27450.1	Thale cress	cytosol	80.39	82.0
KRH27213	Soybean	endoplasmic reticulum	79.22	79.53
KRH22129	Soybean	nucleus	78.82	79.13
KRH26075	Soybean	endoplasmic reticulum	76.86	77.17
Solyc12g013700.1.1	Tomato	cytosol	76.47	76.77
VIT_00s0586g00030.t01	Wine grape	cytosol	72.16	71.88
VIT_00s0561g00020.t01	Wine grape	cytosol	72.16	69.17
Os04t0679400-01	Rice	cytosol	65.49	64.73
Zm00001d026632_P001	Maize	extracellular	67.06	64.53
TraesCSU01G021600.1	Wheat	cytosol	66.67	64.39
TraesCS2A01G586500.1	Wheat	cytosol	66.67	64.39
TraesCS2D01G600100.1	Wheat	cytosol	65.88	63.64
EES13111	Sorghum	cytosol, plastid	65.49	63.5
GSMUA_Achr10P...	Banana	cytosol	65.1	62.41
GSMUA_Achr3P14300_001	Banana	cytosol	64.71	62.26
GSMUA_AchrUn_...	Banana	cytosol	58.04	61.16
VIT_05s0020g04160.t01	Wine grape	cytosol	49.02	50.2
VIT_10s0597g00010.t01	Wine grape	cytosol	29.02	49.01
VIT_14s0036g00050.t01	Wine grape	cytosol, extracellular, peroxisome	42.75	48.66
HORVU2Hr1G118550.2	Barley	cytosol	41.18	42.86
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	38.82	36.53
HORVU2Hr1G118570.2	Barley	cytosol	26.27	24.72

Protein Annotations

EntrezGene:100245111	wikigene:100245111	Gene3D:3.60.20.10	MapMan:35.1	EMBL:AM466643	ProteinID:CAN63710
ProteinID:CAN63710.1	ProteinID:CBI20337	ProteinID:CBI20337.3	InterPro:DUF3700	UniProt:E0CSN8	EMBL:FN595229
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0009506	GO:GO:0016020	InterPro:IPR029055	EntrezGene:LOC100245111	wikigene:LOC100245111
InterPro:Ntn_hydrolases_N	PFAM:PF12481	PANTHER:PTHR11772	PANTHER:PTHR11772:SF15	SMART:SM01172	SUPFAM:SSF56235
TIGR:TC58996	UniParc:UPI00015C7A7D	ArrayExpress:VIT_19s0014g03130	EnsemblPlantsGene:VIT_19s0014g03130	EnsemblPlants:VIT_19s0014g03130.t01	unigene:Vvi.7637
RefSeq:XP_002284777	RefSeq:XP_002284777.1	:	:	:	:

Description

No Description!

Coordinates

chr19:+:3286189..3287458

Molecular Weight (calculated)

27941.2 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.180

Length

255 amino acids

Sequence
(BLAST)

001: MLAIFHKAFA HPPEELNSPA SRDGSRKPKL PEETLREFLS AHPANTFSMS FGTAAALAYV SPDRSYPTHQ RLFGGFDDIY CLFMGSLNNL CTLNRQYGLS
101: KGSNEAMLVI EAYRTLRDRG PYPADQVVKD LEGSFAFVVY DSKAGTVFTA LGSDGGVKLF WGVAADGSVV ISDDLGVIKA GCAKSFAPFP TGCMFHSDGG
201: LMSFEHPMNK MKAMPRIDSE GVMCGANFKV DVYSRINSMP RVGSEVNWSN WEDYH

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.