Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13111 | Sorghum | cytosol, plastid | 88.3 | 88.97 |
| Os04t0679400-01 | Rice | cytosol | 79.25 | 81.4 |
| TraesCSU01G021600.1 | Wheat | cytosol | 78.87 | 79.17 |
| TraesCS2D01G600100.1 | Wheat | cytosol | 78.49 | 78.79 |
| TraesCS2A01G586500.1 | Wheat | cytosol | 77.74 | 78.03 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 69.06 | 69.06 |
| GSMUA_Achr10P... | Banana | cytosol | 68.68 | 68.42 |
| VIT_19s0014g03130.t01 | Wine grape | cytosol | 64.53 | 67.06 |
| KRH22129 | Soybean | nucleus | 63.77 | 66.54 |
| KRH27213 | Soybean | endoplasmic reticulum | 63.77 | 66.54 |
| AT4G27450.1 | Thale cress | cytosol | 60.75 | 64.4 |
| CDX89248 | Canola | cytosol | 60.75 | 64.4 |
| Bra026348.1-P | Field mustard | cytosol | 60.75 | 64.4 |
| CDY29312 | Canola | cytosol | 60.38 | 64.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.11 | 63.64 |
| CDY14279 | Canola | cytosol | 60.0 | 63.6 |
| CDX97384 | Canola | cytosol | 60.0 | 63.6 |
| Bra010404.1-P | Field mustard | cytosol | 60.0 | 63.6 |
| KRH26075 | Soybean | endoplasmic reticulum | 60.75 | 63.39 |
| VIT_00s0586g00030.t01 | Wine grape | cytosol | 60.0 | 62.11 |
| Bra019002.1-P | Field mustard | cytosol | 59.25 | 62.06 |
| CDY53810 | Canola | cytosol | 58.87 | 61.66 |
| CDY26025 | Canola | cytosol | 58.87 | 61.66 |
| AT3G15450.1 | Thale cress | cytosol | 58.49 | 61.26 |
| Bra027243.1-P | Field mustard | cytosol | 58.11 | 60.87 |
| CDX97669 | Canola | cytosol | 58.11 | 60.87 |
| Solyc12g013700.1.1 | Tomato | cytosol | 58.11 | 60.63 |
| CDY56826 | Canola | cytosol | 57.36 | 60.08 |
| VIT_00s0561g00020.t01 | Wine grape | cytosol | 60.0 | 59.77 |
| Bra021110.1-P | Field mustard | cytosol | 56.6 | 59.29 |
| CDY20112 | Canola | cytosol | 56.6 | 59.29 |
| KRH10843 | Soybean | nucleus | 55.47 | 58.57 |
| PGSC0003DMT400057793 | Potato | cytosol | 55.85 | 58.04 |
| KRH10823 | Soybean | cytosol | 54.72 | 57.77 |
| CDY21841 | Canola | plastid | 43.77 | 57.71 |
| PGSC0003DMT400033379 | Potato | cytosol | 54.72 | 57.31 |
| Solyc02g078500.2.1 | Tomato | unclear | 55.09 | 57.25 |
| CDY61102 | Canola | cytosol | 17.74 | 56.63 |
| Solyc03g006490.2.1 | Tomato | cytosol | 53.96 | 56.52 |
| KRH21498 | Soybean | cytosol | 53.21 | 56.18 |
| KRH20474 | Soybean | nucleus | 52.83 | 54.47 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 49.06 | 53.06 |
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 17.74 | 52.22 |
| CDY21375 | Canola | cytosol | 15.09 | 51.95 |
| CDY07847 | Canola | cytosol | 16.6 | 51.76 |
| KRH33539 | Soybean | cytosol | 30.19 | 49.69 |
| KRH63496 | Soybean | cytosol | 35.47 | 48.96 |
| Bra037807.1-P | Field mustard | cytosol | 18.11 | 48.0 |
| KRG89645 | Soybean | cytosol | 34.34 | 46.91 |
| KRH50016 | Soybean | cytosol, nucleus, plastid | 52.45 | 44.27 |
| Zm00001d023376_P002 | Maize | extracellular | 36.6 | 40.76 |
| HORVU2Hr1G118570.2 | Barley | cytosol | 30.94 | 30.26 |
| Zm00001d033983_P001 | Maize | cytosol | 42.64 | 30.21 |
| Zm00001d052493_P001 | Maize | plastid | 37.36 | 27.35 |
Protein Annotations
| EnsemblPlants:Zm00001d026632_P001 | EnsemblPlants:Zm00001d026632_T001 | EnsemblPlantsGene:Zm00001d026632 | Gene3D:3.60.20.10 | InterPro:DUF3700 | InterPro:IPR029055 |
| InterPro:Ntn_hydrolases_N | PANTHER:PTHR11772 | PANTHER:PTHR11772:SF14 | PFAM:PF12481 | ProteinID:AQK47295.1 | SEG:seg |
| SMART:SM01172 | SUPFAM:SSF56235 | UniParc:UPI0008446647 | UniProt:A0A1D6JI62 | MapMan:35.1 | : |
Description
Stem-specific protein TSJT1
Coordinates
chr10:-:149192883..149193680
Molecular Weight (calculated)
27933.2 Da
IEP (calculated)
7.783
GRAVY (calculated)
-0.010
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIFQKQVA HAPQELNSPR AGASPSKPRN PDEILRDFHA AHPAAAFSAS FGGGAALACV GPSSSATATG TATYQRMFCG LDHIYCVFLG RLDNLSGLIR
101: QYGLCGRSTN EAMLVIEAYR TLRDRGPYPA DQVVKDLAGA FAFVVFDSRS GAVFAALGAA DAGGAPVPLY WGVAADGSAV ISDDRDLVKR GCGKSYAPFP
201: AGCMFHSDGG LKSFEHPMNR LKAMPRVDSE GAMCGATFKV DTFTKINSMP RVGSAANWAA WDEAI
101: QYGLCGRSTN EAMLVIEAYR TLRDRGPYPA DQVVKDLAGA FAFVVFDSRS GAVFAALGAA DAGGAPVPLY WGVAADGSAV ISDDRDLVKR GCGKSYAPFP
201: AGCMFHSDGG LKSFEHPMNR LKAMPRVDSE GAMCGATFKV DTFTKINSMP RVGSAANWAA WDEAI
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.