CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91376
KRH35440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27450.1	KRG91376	AT5G43830.1	21798944
AT4G27450.1	KRH35440	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27213	Soybean	endoplasmic reticulum	99.21	99.21
KRH26075	Soybean	endoplasmic reticulum	85.04	85.04
CDY29312	Canola	cytosol	83.07	84.4
Bra026348.1-P	Field mustard	cytosol	82.68	84.0
CDX89248	Canola	cytosol	82.68	84.0
AT4G27450.1	Thale cress	cytosol	82.68	84.0
CDX97384	Canola	cytosol	82.28	83.6
Bra010404.1-P	Field mustard	cytosol	81.5	82.8
CDY14279	Canola	cytosol	81.5	82.8
VIT_19s0014g03130.t01	Wine grape	cytosol	79.13	78.82
Solyc12g013700.1.1	Tomato	cytosol	73.23	73.23
Os04t0679400-01	Rice	cytosol	65.75	64.73
KRH21498	Soybean	cytosol	63.39	64.14
KRH10823	Soybean	cytosol	63.39	64.14
Zm00001d026632_P001	Maize	extracellular	66.54	63.77
KRH10843	Soybean	nucleus	62.99	63.74
EES13111	Sorghum	cytosol, plastid	65.35	63.12
KRH20474	Soybean	nucleus	62.6	61.87
TraesCS2D01G600100.1	Wheat	cytosol	64.17	61.74
TraesCS2A01G586500.1	Wheat	cytosol	64.17	61.74
GSMUA_Achr3P14300_001	Banana	cytosol	64.17	61.51
TraesCSU01G021600.1	Wheat	cytosol	63.78	61.36
GSMUA_AchrUn_...	Banana	cytosol	58.27	61.16
GSMUA_Achr10P...	Banana	cytosol	63.78	60.9
KRH33539	Soybean	cytosol	36.22	57.14
KRH63496	Soybean	cytosol	42.91	56.77
KRG89645	Soybean	cytosol	40.94	53.61
KRH21458	Soybean	cytosol	25.98	51.16
KRH50016	Soybean	cytosol, nucleus, plastid	62.99	50.96
KRH35440	Soybean	cytosol, nucleus	46.06	46.8
KRG91376	Soybean	cytosol, nucleus	45.67	46.4
KRH02111	Soybean	cytosol	41.34	44.49
KRH20897	Soybean	nucleus	40.94	44.07
KRH51038	Soybean	plastid	40.16	43.4
KRH10856	Soybean	cytosol	42.52	42.52
HORVU2Hr1G118550.2	Barley	cytosol	38.58	40.0
KRH38367	Soybean	extracellular	18.11	38.02
KRH11390	Soybean	nucleus	40.94	35.49
HORVU2Hr1G118570.2	Barley	cytosol	26.38	24.72

Protein Annotations

EMBL:ACUP02008380	EnsemblPlants:KRH22129	EnsemblPlantsGene:GLYMA_13G279200	EntrezGene:100783727	Gene3D:3.60.20.10	InterPro:DUF3700
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF15	PFAM:PF12481	ProteinID:KRH22129
ProteinID:KRH22129.1	SEG:seg	SMART:SM01172	SUPFAM:SSF56235	UniParc:UPI000233B95A	UniProt:I1M3B1
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:38036685..38038796

Molecular Weight (calculated)

28048.4 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.214

Length

254 amino acids

Sequence
(BLAST)

001: MLAIFHKAFA HPPEELNSPA SYKGSKKPKV PEETLKDFLS HHPHNTCSMS FGEAAVLAYV RPDQSFSRHQ RLFCGIDNIY CLFLGSLNNL SLLNKQYGLS
101: KSTDEAMFVI EAYKTLRDRG PYPADQVVKE LDGSFAFVVY DSKVGSVFAA LGSDGGVKLY WGIAADGSVV ISDDLEVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK LKAMPRVDSE GAMCGANFKV DKFARVNSIP RVGSQSNWME WDQH

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.