Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27450.1 | CDY32931 | AT5G43830.1 | 21798944 |
| AT4G27450.1 | CDY50809 | AT5G43830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14279 | Canola | cytosol | 98.8 | 98.8 |
| AT4G27450.1 | Thale cress | cytosol | 97.2 | 97.2 |
| CDY29312 | Canola | cytosol | 96.8 | 96.8 |
| CDX89248 | Canola | cytosol | 96.8 | 96.8 |
| KRH27213 | Soybean | endoplasmic reticulum | 84.0 | 82.68 |
| KRH22129 | Soybean | nucleus | 83.6 | 82.28 |
| VIT_19s0014g03130.t01 | Wine grape | cytosol | 83.2 | 81.57 |
| KRH26075 | Soybean | endoplasmic reticulum | 80.0 | 78.74 |
| Solyc12g013700.1.1 | Tomato | cytosol | 76.4 | 75.2 |
| CDY26025 | Canola | cytosol | 73.6 | 72.73 |
| CDY53810 | Canola | cytosol | 72.8 | 71.94 |
| CDX97669 | Canola | cytosol | 72.4 | 71.54 |
| CDY56826 | Canola | cytosol | 71.6 | 70.75 |
| CDY20112 | Canola | cytosol | 70.4 | 69.57 |
| CDY21841 | Canola | plastid | 54.4 | 67.66 |
| Os04t0679400-01 | Rice | cytosol | 63.2 | 61.24 |
| CDY61102 | Canola | cytosol | 20.0 | 60.24 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 63.6 | 60.0 |
| Zm00001d026632_P001 | Maize | extracellular | 63.6 | 60.0 |
| GSMUA_Achr10P... | Banana | cytosol | 63.6 | 59.77 |
| TraesCS2D01G600100.1 | Wheat | cytosol | 62.4 | 59.09 |
| TraesCS2A01G586500.1 | Wheat | cytosol | 62.4 | 59.09 |
| EES13111 | Sorghum | cytosol, plastid | 62.0 | 58.94 |
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 21.2 | 58.89 |
| TraesCSU01G021600.1 | Wheat | cytosol | 62.0 | 58.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.0 | 57.85 |
| CDY21375 | Canola | cytosol | 17.2 | 55.84 |
| CDY07847 | Canola | cytosol | 18.8 | 55.29 |
| CDY32931 | Canola | cytosol | 47.6 | 47.41 |
| CDY50809 | Canola | peroxisome | 47.6 | 47.41 |
| CDY61079 | Canola | cytosol | 46.4 | 46.59 |
| CDX92962 | Canola | cytosol | 46.0 | 46.18 |
| CDY47200 | Canola | cytosol | 42.4 | 45.3 |
| CDY02581 | Canola | cytosol | 42.4 | 45.3 |
| CDY59022 | Canola | cytosol | 41.6 | 44.44 |
| CDX88900 | Canola | cytosol | 41.2 | 44.02 |
| CDX92551 | Canola | cytosol | 41.2 | 43.64 |
| CDY13981 | Canola | cytosol | 41.2 | 43.64 |
| CDY59012 | Canola | cytosol | 41.6 | 41.11 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 39.6 | 40.41 |
| CDX87121 | Canola | cytosol | 25.2 | 28.38 |
| CDY32292 | Canola | plasma membrane | 21.6 | 24.43 |
| CDX80239 | Canola | vacuole | 22.0 | 23.71 |
| HORVU2Hr1G118570.2 | Barley | cytosol | 24.0 | 22.14 |
| CDX76924 | Canola | mitochondrion | 13.6 | 17.09 |
Protein Annotations
| EnsemblPlants:CDX97384 | EnsemblPlantsGene:GSBRNA2T00104493001 | Gene3D:3.60.20.10 | InterPro:DUF3700 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N |
| PANTHER:PTHR11772 | PANTHER:PTHR11772:SF15 | PFAM:PF12481 | ProteinID:CDX97384 | ProteinID:CDX97384.1 | SMART:SM01172 |
| SUPFAM:SSF56235 | UniParc:UPI0002C8A59E | MapMan:35.1 | : | : | : |
Description
BnaC08g12490D
Coordinates
chrLK031899:-:220801..222250
Molecular Weight (calculated)
27533.8 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.069
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIFHEAFA HPPEELHSPA SEKCSKQPKL PEETLNSFLS RYPLNTFSMS FGKAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFAFVVY DSKAGSVFTA LGSDGGVKLF WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYSRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFAFVVY DSKAGSVFTA LGSDGGVKLF WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYSRVNSIP RRGSEANWSL
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.