Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19140.1 | CDX92167 | AT3G17840.1 | 15618630 |
| AT5G19140.1 | CDX95816 | AT3G17840.1 | 15618630 |
| AT5G19140.1 | CDY61284 | AT3G17840.1 | 15618630 |
| AT5G19140.1 | CDY67567 | AT3G17840.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32292 | Canola | plasma membrane | 88.36 | 92.76 |
| Bra023707.1-P | Field mustard | cytosol | 34.91 | 48.21 |
| CDY47200 | Canola | cytosol | 38.36 | 38.03 |
| CDY02581 | Canola | cytosol | 38.36 | 38.03 |
| CDX92551 | Canola | cytosol | 38.36 | 37.71 |
| CDY13981 | Canola | cytosol | 38.36 | 37.71 |
| AT5G19140.1 | Thale cress | plastid | 37.93 | 37.61 |
| CDX88900 | Canola | cytosol | 37.93 | 37.61 |
| CDY59022 | Canola | cytosol | 37.5 | 37.18 |
| CDY59012 | Canola | cytosol | 37.93 | 34.78 |
| KRH20897 | Soybean | nucleus | 33.19 | 32.63 |
| KRH51038 | Soybean | plastid | 32.33 | 31.91 |
| Solyc06g054370.1.1 | Tomato | cytosol, plastid | 28.02 | 31.86 |
| TraesCS5B01G131500.1 | Wheat | golgi | 31.9 | 31.36 |
| KRH02111 | Soybean | cytosol | 31.9 | 31.36 |
| HORVU5Hr1G040970.1 | Barley | cytosol | 31.47 | 30.93 |
| Solyc01g079880.2.1 | Tomato | plastid | 31.47 | 30.93 |
| TraesCS5A01G134000.1 | Wheat | golgi | 31.47 | 30.93 |
| TraesCS5D01G139300.1 | Wheat | golgi, unclear | 31.47 | 30.93 |
| Os12t0145100-01 | Rice | cytosol, plastid | 31.47 | 30.67 |
| EES09256 | Sorghum | cytosol | 31.47 | 30.67 |
| PGSC0003DMT400023208 | Potato | plastid | 31.03 | 30.51 |
| Os11t0147800-01 | Rice | cytosol | 31.03 | 30.38 |
| Zm00001d023376_P002 | Maize | extracellular | 30.17 | 29.41 |
| VIT_05s0020g02770.t01 | Wine grape | cytosol, plastid | 32.76 | 28.04 |
| GSMUA_Achr8P08600_001 | Banana | cytosol | 28.45 | 27.97 |
| GSMUA_Achr8P00370_001 | Banana | cytosol | 28.45 | 27.97 |
| KXG22952 | Sorghum | cytosol, plastid | 29.31 | 27.76 |
| KRH11390 | Soybean | nucleus | 34.91 | 27.65 |
| CDY21841 | Canola | plastid | 20.26 | 23.38 |
| CDX97669 | Canola | cytosol | 25.0 | 22.92 |
| CDY56826 | Canola | cytosol | 25.0 | 22.92 |
| CDY53810 | Canola | cytosol | 24.57 | 22.53 |
| GSMUA_Achr11P... | Banana | cytosol | 22.41 | 22.51 |
| CDX89248 | Canola | cytosol | 24.14 | 22.4 |
| CDY29312 | Canola | cytosol | 24.14 | 22.4 |
| CDY26025 | Canola | cytosol | 24.14 | 22.13 |
| CDX97384 | Canola | cytosol | 23.71 | 22.0 |
| CDY14279 | Canola | cytosol | 23.71 | 22.0 |
| CDY20112 | Canola | cytosol | 23.71 | 21.74 |
| CDY50809 | Canola | peroxisome | 22.84 | 21.12 |
| CDY32931 | Canola | cytosol | 22.84 | 21.12 |
| CDY61079 | Canola | cytosol | 22.41 | 20.88 |
| CDX92962 | Canola | cytosol | 22.41 | 20.88 |
| Zm00001d052493_P001 | Maize | plastid | 30.6 | 19.61 |
| CDX87121 | Canola | cytosol | 16.38 | 17.12 |
| CDX76924 | Canola | mitochondrion | 6.9 | 8.04 |
| KRH38367 | Soybean | extracellular | 3.02 | 5.79 |
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 2.16 | 5.56 |
| CDY21375 | Canola | cytosol | 1.72 | 5.19 |
| CDY61102 | Canola | cytosol | 0.86 | 2.41 |
| CDY07847 | Canola | cytosol | 0.86 | 2.35 |
Protein Annotations
| EnsemblPlants:CDX80239 | EnsemblPlantsGene:GSBRNA2T00133206001 | Gene3D:3.40.30.10 | InterPro:DUF3700 | PANTHER:PTHR11772 | PANTHER:PTHR11772:SF18 |
| PFAM:PF12481 | ProteinID:CDX80239 | ProteinID:CDX80239.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM01172 |
| UniParc:UPI0004EF343D | MapMan:35.1 | : | : | : | : |
Description
BnaC09g35030D
Coordinates
chrLK031820:+:784849..786474
Molecular Weight (calculated)
25683.0 Da
IEP (calculated)
4.874
GRAVY (calculated)
0.037
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETSLLFFS SSLCLPLCLS LVFINNGKPV CESAIQVQYI DEVWSDKNPI LPSDPYRRAL TGKFGGGGDT LVAMTKKKTP QILKTDTTLK LWVANMSMPA
101: EDDPIEAQQE ARPPSSNMSL QRLQTECRLI YELLLCLTFL AYACLKDGSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA NEVLLVIEAY KTLRDRAPYP
201: ANHVVSYLSG DFAFVVFDKS TSTLFVASVS SF
101: EDDPIEAQQE ARPPSSNMSL QRLQTECRLI YELLLCLTFL AYACLKDGSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA NEVLLVIEAY KTLRDRAPYP
201: ANHVVSYLSG DFAFVVFDKS TSTLFVASVS SF
001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD
Arabidopsis Description
ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.