Factsheet for TraesCS5D01G139300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, plastid
MultiLoc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G337000.1
TraesCS2B01G344900.1
TraesCS2D01G325900.1
TraesCS4A01G064200.1
TraesCS4A01G267300.1
TraesCS4B01G047100.1
TraesCS4B01G241500.1
TraesCS4D01G046900.1
TraesCS4D01G241100.1
TraesCS5A01G205500.1
TraesCS5B01G202900.1
TraesCS5D01G210800.1
TraesCS7A01G214300.1
TraesCS7B01G121600.1
TraesCS7D01G216400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19140.1	TraesCS2A01G337000.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS2B01G344900.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS2D01G325900.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS4A01G064200.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS4A01G267300.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS4B01G047100.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS4B01G241500.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS4D01G046900.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS4D01G241100.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS5A01G205500.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS5B01G202900.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS5D01G210800.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS7A01G214300.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS7B01G121600.1	AT3G17840.1	15618630
AT5G19140.1	TraesCS7D01G216400.1	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G134000.1	Wheat	golgi	99.58	99.58
TraesCS5B01G131500.1	Wheat	golgi	98.73	98.73
HORVU5Hr1G040970.1	Barley	cytosol	95.76	95.76
Os11t0147800-01	Rice	cytosol	89.83	89.45
EES09256	Sorghum	cytosol	88.98	88.24
Os12t0145100-01	Rice	cytosol, plastid	88.14	87.39
Zm00001d023376_P002	Maize	extracellular	87.71	86.97
KXG22952	Sorghum	cytosol, plastid	86.86	83.67
GSMUA_Achr8P08600_001	Banana	cytosol	79.24	79.24
GSMUA_Achr8P00370_001	Banana	cytosol	78.39	78.39
Bra023707.1-P	Field mustard	cytosol	52.12	73.21
AT5G19140.1	Thale cress	plastid	70.34	70.94
CDY47200	Canola	cytosol	69.49	70.09
CDY02581	Canola	cytosol	69.49	70.09
CDY13981	Canola	cytosol	69.92	69.92
CDX92551	Canola	cytosol	69.92	69.92
KRH51038	Soybean	plastid	69.49	69.79
Bra002216.1-P	Field mustard	cytosol	69.49	69.49
CDY59022	Canola	cytosol	68.64	69.23
KRH02111	Soybean	cytosol	69.07	69.07
CDX88900	Canola	cytosol	68.22	68.8
KRH20897	Soybean	nucleus	68.22	68.22
PGSC0003DMT400023208	Potato	plastid	67.37	67.37
Solyc01g079880.2.1	Tomato	plastid	67.37	67.37
CDY59012	Canola	cytosol	67.8	63.24
Solyc06g054370.1.1	Tomato	cytosol, plastid	52.97	61.27
GSMUA_Achr11P...	Banana	cytosol	57.2	58.44
KRH11390	Soybean	nucleus	69.49	55.97
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	63.98	55.72
Zm00001d052493_P001	Maize	plastid	82.63	53.87
KRH38367	Soybean	extracellular	25.85	50.41
TraesCS5D01G445900.1	Wheat	cytosol	45.34	43.32
TraesCS5D01G392600.1	Wheat	peroxisome	44.92	42.06
TraesCS2D01G600100.1	Wheat	cytosol	42.8	38.26
CDY32292	Canola	plasma membrane	30.51	32.58
CDX80239	Canola	vacuole	30.93	31.47

Protein Annotations

EnsemblPlants:TraesCS5D01G139300.1	EnsemblPlantsGene:TraesCS5D01G139300	Gene3D:3.60.20.10	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:DUF3700	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF18
PFAM:PF12481	SEG:seg	SMART:SM01172	SUPFAM:SSF56235	TIGR:cd01910	MapMan:35.1

Description

No Description!

Coordinates

chr5D:+:221879462..221882267

Molecular Weight (calculated)

25074.0 Da

IEP (calculated)

4.560

GRAVY (calculated)

0.166

Length

236 amino acids

Sequence
(BLAST)

001: MLAVFSGEVV EVPAELVAAG SRTPSPKTRA SELVKRFLAG AEPAVSVELG SLGNLAYSHA NQSLLLPRSF AAKDEIFCLF EGVLDNLGRL SQQYGLSKGG
101: NEVLLVIEAY KTLRDRAPYP ASFMLSQLTG SYAFVLFDKS TSSLLVASDP EGKVPLFWGI TADGCVAFSD DIDLLKGSCG KSLAPFPQGC FYWNALGGLK
201: SYENPKNKVT AVPADEEEIC GATFMVEGST VVAALQ

Best Arabidopsis Sequence Match ( AT5G19140.1 )
(BLAST)

001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD

Arabidopsis Description

ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.