Factsheet for GSMUA_Achr11P20020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P21610_001
GSMUA_Achr3P02160_001
GSMUA_Achr3P07440_001
GSMUA_Achr6P05910_001
GSMUA_Achr7P11160_001
GSMUA_Achr8P23000_001
GSMUA_Achr9P15690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19140.1	GSMUA_Achr10P...	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr2P21610_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr3P02160_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr3P07440_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr6P05910_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr7P11160_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr8P23000_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr9P15690_001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08600_001	Banana	cytosol	65.37	63.98
GSMUA_Achr8P00370_001	Banana	cytosol	63.64	62.29
TraesCS5A01G134000.1	Wheat	golgi	58.87	57.63
TraesCS5D01G139300.1	Wheat	golgi, unclear	58.44	57.2
TraesCS5B01G131500.1	Wheat	golgi	58.01	56.78
Os11t0147800-01	Rice	cytosol	58.01	56.54
HORVU5Hr1G040970.1	Barley	cytosol	57.58	56.36
Os12t0145100-01	Rice	cytosol, plastid	57.58	55.88
Zm00001d023376_P002	Maize	extracellular	57.14	55.46
EES09256	Sorghum	cytosol	56.71	55.04
Bra023707.1-P	Field mustard	cytosol	39.39	54.17
KXG22952	Sorghum	cytosol, plastid	57.14	53.88
CDY02581	Canola	cytosol	51.95	51.28
CDX88900	Canola	cytosol	51.95	51.28
KRH20897	Soybean	nucleus	52.38	51.27
CDY47200	Canola	cytosol	51.52	50.85
CDY59022	Canola	cytosol	51.52	50.85
AT5G19140.1	Thale cress	plastid	51.52	50.85
CDX92551	Canola	cytosol	51.52	50.42
CDY13981	Canola	cytosol	51.52	50.42
Bra002216.1-P	Field mustard	cytosol	51.08	50.0
KRH51038	Soybean	plastid	50.65	49.79
KRH02111	Soybean	cytosol	50.65	49.58
Solyc01g079880.2.1	Tomato	plastid	49.78	48.73
PGSC0003DMT400023208	Potato	plastid	49.35	48.31
Solyc06g054370.1.1	Tomato	cytosol, plastid	41.13	46.57
CDY59012	Canola	cytosol	49.78	45.45
GSMUA_Achr10P...	Banana	cytosol	48.48	43.58
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	49.35	42.07
KRH11390	Soybean	nucleus	52.81	41.64
KRH38367	Soybean	extracellular	19.48	37.19
GSMUA_Achr3P30980_001	Banana	plastid	38.53	36.03
Zm00001d052493_P001	Maize	plastid	55.84	35.64
GSMUA_Achr1P14100_001	Banana	cytosol	38.1	35.48
GSMUA_Achr2P08920_001	Banana	cytosol	37.23	34.82
GSMUA_Achr4P07750_001	Banana	cytosol	36.8	34.41
GSMUA_Achr10P...	Banana	cytosol	37.23	32.33
GSMUA_Achr3P14300_001	Banana	cytosol	36.8	32.08
GSMUA_AchrUn_...	Banana	cytosol	30.74	29.34
CDY32292	Canola	plasma membrane	22.94	23.98
CDX80239	Canola	vacuole	22.51	22.41

Protein Annotations

EnsemblPlants:GSMUA_Achr11P20020_001	EnsemblPlants:GSMUA_Achr11T20020_001	EnsemblPlantsGene:GSMUA_Achr11G20020_001	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF18	PFAM:PF12481	SMART:SM01172	SUPFAM:SSF56235
UniParc:UPI000296C9ED	UniProt:M0RTT2	MapMan:35.2	:	:	:

Description

Putative Stem-specific protein TSJT1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20020_001]

Coordinates

chr11:-:21014766..21015899

Molecular Weight (calculated)

24664.9 Da

IEP (calculated)

5.998

GRAVY (calculated)

0.263

Length

231 amino acids

Sequence
(BLAST)

001: MLGVFSGDVV DVPGELMAVG SSTPCPKTPA SELVNRFLEC TPPVMLLKVG GFGHLAFRPI SKSSIHTRFA AEDAIQCLFK GVLTNLGSLR HQYDLRNSDD
101: EAVTVIKAYK VIRDRSPYPP NLLLSHLSGS FALVLFDMNS SSILVASDVD GRVPLFWGIT SDGCLAVSDD LEVLKGSCGK SLAPFPPGCF YSNTLGGLKS
201: YHSPGDRVIA VLGSEEDVCG VTFKVLLIPT L

Best Arabidopsis Sequence Match ( AT5G19140.1 )
(BLAST)

001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD

Arabidopsis Description

ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.