Factsheet for GSMUA_AchrUn_randomP05230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P14100_001
GSMUA_Achr2P08220_001
GSMUA_Achr2P08920_001
GSMUA_Achr3P30980_001
GSMUA_Achr4P07750_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15450.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT3G15450.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT3G15450.1	GSMUA_Achr1P14100_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr2P08920_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr3P30980_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr4P07750_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr1P14100_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr2P08920_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr3P30980_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr4P07750_001	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	82.23	74.81
GSMUA_Achr3P14300_001	Banana	cytosol	75.21	68.68
Os04t0679400-01	Rice	cytosol	66.12	62.02
EES13111	Sorghum	cytosol, plastid	64.05	58.94
KRH27213	Soybean	endoplasmic reticulum	61.16	58.27
KRH22129	Soybean	nucleus	61.16	58.27
Zm00001d026632_P001	Maize	extracellular	63.64	58.11
VIT_19s0014g03130.t01	Wine grape	cytosol	61.16	58.04
TraesCSU01G021600.1	Wheat	cytosol	62.81	57.58
TraesCS2A01G586500.1	Wheat	cytosol	62.81	57.58
TraesCS2D01G600100.1	Wheat	cytosol	61.98	56.82
Bra026348.1-P	Field mustard	cytosol	58.26	56.4
CDX89248	Canola	cytosol	58.26	56.4
CDY29312	Canola	cytosol	58.26	56.4
AT4G27450.1	Thale cress	cytosol	57.85	56.0
CDX97384	Canola	cytosol	57.85	56.0
Bra010404.1-P	Field mustard	cytosol	57.44	55.6
CDY14279	Canola	cytosol	57.44	55.6
Solyc12g013700.1.1	Tomato	cytosol	58.26	55.51
CDY21841	Canola	plastid	45.45	54.73
KRH26075	Soybean	endoplasmic reticulum	57.02	54.33
CDY56826	Canola	cytosol	56.2	53.75
AT3G15450.1	Thale cress	cytosol	55.79	53.36
CDX97669	Canola	cytosol	55.79	53.36
CDY53810	Canola	cytosol	55.37	52.96
Bra027243.1-P	Field mustard	cytosol	55.37	52.96
CDY20112	Canola	cytosol	54.96	52.57
Bra019002.1-P	Field mustard	cytosol	54.96	52.57
VIT_00s0586g00030.t01	Wine grape	cytosol	55.37	52.34
Bra021110.1-P	Field mustard	cytosol	54.55	52.17
CDY26025	Canola	cytosol	54.13	51.78
VIT_00s0561g00020.t01	Wine grape	cytosol	55.37	50.38
KRH10823	Soybean	cytosol	52.07	50.2
KRH20474	Soybean	nucleus	52.89	49.81
KRH10843	Soybean	nucleus	51.65	49.8
KRH21498	Soybean	cytosol	51.65	49.8
PGSC0003DMT400033379	Potato	cytosol	50.41	48.22
PGSC0003DMT400057793	Potato	cytosol	50.0	47.45
Solyc02g078500.2.1	Tomato	unclear	49.59	47.06
Solyc03g006490.2.1	Tomato	cytosol	49.17	47.04
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	17.36	46.67
CDY21375	Canola	cytosol	13.64	42.86
KRH63496	Soybean	cytosol	33.47	42.19
KRH33539	Soybean	cytosol	27.69	41.61
CDY61102	Canola	cytosol	13.64	39.76
KRH50016	Soybean	cytosol, nucleus, plastid	51.24	39.49
HORVU2Hr1G118550.2	Barley	cytosol	39.67	39.18
GSMUA_Achr2P08920_001	Banana	cytosol	38.84	38.06
GSMUA_Achr1P14100_001	Banana	cytosol	38.84	37.9
GSMUA_Achr4P07750_001	Banana	cytosol	38.43	37.65
GSMUA_Achr3P30980_001	Banana	plastid	37.6	36.84
KRG89645	Soybean	cytosol	29.34	36.6
CDY07847	Canola	cytosol	12.4	35.29
Bra037807.1-P	Field mustard	cytosol	14.46	35.0
GSMUA_Achr8P08600_001	Banana	cytosol	33.88	34.75
GSMUA_Achr8P00370_001	Banana	cytosol	33.47	34.32
GSMUA_Achr10P...	Banana	cytosol	34.71	32.68
GSMUA_Achr11P...	Banana	cytosol	29.34	30.74
HORVU2Hr1G118570.2	Barley	cytosol	26.03	23.25

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP05230_001	EnsemblPlants:GSMUA_AchrUn_randomT05230_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG05230_001	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF14	PFAM:PF12481	SEG:seg	SMART:SM01172
SUPFAM:SSF56235	UniParc:UPI000295F8A3	UniProt:M0U6I5	MapMan:35.1	:	:

Description

Putative Stem-specific protein TSJT1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05230_001]

Coordinates

chrchrUn_random:+:20620166..20621326

Molecular Weight (calculated)

26776.0 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.243

Length

242 amino acids

Sequence
(BLAST)

001: MLAIFHKTFA HPPQELNCPE STYGGPPKPG YRRRQPKNPD EILRDFHSTH PAHSLCATFS CGAALACLGL DAPHPSLHHQ RLFCSFDEVY CMFVGSLNNL
101: SSLIRQYGLC SKSTNEALLV IQAYRTLRDR GPYPAAQVLK ELAGSFAFVV YDNKTGAVFA ALSSDGGVPL CGKSYVPFPT GFMFHSEGGL RSFEHPTRKM
201: RAMPKVDSER VMCGASFRVD TFYKVNTMPR VGSASNWASW ND

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.