Factsheet for PGSC0003DMT400033379

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400077577

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15450.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT3G15450.1	PGSC0003DMT400077577	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006490.2.1	Tomato	cytosol	97.63	97.63
PGSC0003DMT400057793	Potato	cytosol	82.21	81.57
VIT_00s0586g00030.t01	Wine grape	cytosol	65.61	64.84
KRH10823	Soybean	cytosol	63.24	63.74
KRH21498	Soybean	cytosol	62.06	62.55
VIT_00s0561g00020.t01	Wine grape	cytosol	65.61	62.41
KRH10843	Soybean	nucleus	61.66	62.15
KRH20474	Soybean	nucleus	62.45	61.48
AT3G15450.1	Thale cress	cytosol	59.29	59.29
CDY56826	Canola	cytosol	59.29	59.29
Bra027243.1-P	Field mustard	cytosol	58.89	58.89
CDX97669	Canola	cytosol	58.89	58.89
CDY26025	Canola	cytosol	58.89	58.89
CDY53810	Canola	cytosol	58.89	58.89
Bra021110.1-P	Field mustard	cytosol	58.5	58.5
Bra019002.1-P	Field mustard	cytosol	58.1	58.1
CDY20112	Canola	cytosol	58.1	58.1
KRH33539	Soybean	cytosol	36.76	57.76
CDY21841	Canola	plastid	44.27	55.72
EES13111	Sorghum	cytosol, plastid	57.71	55.51
Zm00001d026632_P001	Maize	extracellular	57.31	54.72
Os04t0679400-01	Rice	cytosol	55.73	54.65
GSMUA_Achr10P...	Banana	cytosol	56.13	53.38
CDY21375	Canola	cytosol	16.21	53.25
KRH63496	Soybean	cytosol	40.32	53.12
CDY61102	Canola	cytosol	17.39	53.01
TraesCS2D01G600100.1	Wheat	cytosol	54.55	52.27
TraesCSU01G021600.1	Wheat	cytosol	54.15	51.89
TraesCS2A01G586500.1	Wheat	cytosol	54.15	51.89
GSMUA_Achr3P14300_001	Banana	cytosol	53.75	51.32
GSMUA_AchrUn_...	Banana	cytosol	48.22	50.41
KRH50016	Soybean	cytosol, nucleus, plastid	62.06	50.0
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	17.79	50.0
CDY07847	Canola	cytosol	16.6	49.41
KRG89645	Soybean	cytosol	36.36	47.42
PGSC0003DMT400077577	Potato	cytosol	46.64	47.01
Bra037807.1-P	Field mustard	cytosol	18.58	47.0
PGSC0003DMT400057654	Potato	cytosol	44.66	45.56
PGSC0003DMT400023208	Potato	plastid	38.74	41.53
HORVU2Hr1G118550.2	Barley	cytosol	31.62	32.65
HORVU2Hr1G118570.2	Barley	cytosol	23.72	22.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400033379	EnsemblPlantsGene:PGSC0003DMG400012822	EntrezGene:102603129	InterPro:DUF3700	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PANTHER:PTHR11772	PANTHER:PTHR11772:SF15	PFAM:PF12481	PGSC:PGSC0003DMG400012822	RefSeq:XP_006343243.1	SMART:SM01172
SUPFAM:SSF56235	UniParc:UPI000296D1D5	UniProt:M1AZ20	MapMan:35.1	:	:

Description

Stem-specific protein TSJT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012822]

Coordinates

chr3:+:1975872..1978026

Molecular Weight (calculated)

27746.2 Da

IEP (calculated)

8.044

GRAVY (calculated)

-0.129

Length

253 amino acids

Sequence
(BLAST)

001: MLAIFKNGVV DPPKELQSPA SLQASIKAAT PEETMKNFLS ANPNNGFSIG FMNKAFLAYS NPSTSYNTLP RLFCGVNDIY CIFLGSLSNL CALNKHYGLS
101: KCANEAMLVS EAYRTLRDRG PYPAHQVLKE LEGSFGFVIY DHKADTVFAA LGGDEKVKLF WGIAFDGSVM ISDNVDHIKA SCIKSFAPFP SGCMYHSETG
201: LKSYEHPSYK MKAMPRVDSE GSMCGAYFKV DVYSKVNSMP RVGSAANWAT WGQ

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.