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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g056620.2.1
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc09g082780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G15450.1 Solyc02g093290.2.1 AT2G23420.1 21798944
AT3G15450.1 Solyc03g044430.2.1 AT2G23420.1 21798944
AT3G15450.1 Solyc01g056620.2.1 AT3G62800.1 21798944
AT3G15450.1 Solyc09g082780.2.1 AT5G43830.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400033379 Potato cytosol 97.63 97.63
Solyc02g078500.2.1 Tomato unclear 82.21 81.57
VIT_00s0586g00030.t01 Wine grape cytosol 65.22 64.45
KRH10823 Soybean cytosol 63.64 64.14
KRH21498 Soybean cytosol 62.45 62.95
Solyc12g013700.1.1 Tomato cytosol 62.85 62.6
KRH10843 Soybean nucleus 62.06 62.55
VIT_00s0561g00020.t01 Wine grape cytosol 65.22 62.03
KRH20474 Soybean nucleus 61.66 60.7
AT3G15450.1 Thale cress cytosol 59.68 59.68
CDY56826 Canola cytosol 59.29 59.29
Bra027243.1-P Field mustard cytosol 58.89 58.89
CDX97669 Canola cytosol 58.89 58.89
Bra021110.1-P Field mustard cytosol 58.5 58.5
KRH33539 Soybean cytosol 37.15 58.39
CDY20112 Canola cytosol 58.1 58.1
CDY26025 Canola cytosol 57.71 57.71
CDY53810 Canola cytosol 57.71 57.71
Bra019002.1-P Field mustard cytosol 56.92 56.92
CDY21841 Canola plastid 44.27 55.72
EES13111 Sorghum cytosol, plastid 56.52 54.37
Zm00001d026632_P001 Maize extracellular 56.52 53.96
Os04t0679400-01 Rice cytosol 54.94 53.88
KRH63496 Soybean cytosol 40.71 53.65
CDY21375 Canola cytosol 16.21 53.25
CDY61102 Canola cytosol 17.39 53.01
GSMUA_Achr10P... Banana cytosol 54.94 52.26
TraesCS2D01G600100.1 Wheat cytosol 53.75 51.52
TraesCSU01G021600.1 Wheat cytosol 53.36 51.14
TraesCS2A01G586500.1 Wheat cytosol 53.36 51.14
GSMUA_Achr3P14300_001 Banana cytosol 52.96 50.57
CDX71441 Canola cytosol, mitochondrion, plastid, vacuole 17.79 50.0
CDY07847 Canola cytosol 16.6 49.41
KRH50016 Soybean cytosol, nucleus, plastid 61.26 49.36
GSMUA_AchrUn_... Banana cytosol 47.04 49.17
KRG89645 Soybean cytosol 36.36 47.42
Bra037807.1-P Field mustard cytosol 18.58 47.0
Solyc09g082780.2.1 Tomato nucleus 45.85 46.22
Solyc02g078380.2.1 Tomato extracellular, nucleus 42.69 42.69
Solyc01g079880.2.1 Tomato plastid 38.74 41.53
Solyc06g054370.1.1 Tomato cytosol, plastid 30.04 37.25
HORVU2Hr1G118550.2 Barley cytosol 31.23 32.24
HORVU2Hr1G118570.2 Barley cytosol 23.32 21.77
Protein Annotations
EnsemblPlants:Solyc03g006490.2.1EnsemblPlantsGene:Solyc03g006490.2InterPro:DUF3700InterPro:IPR029055InterPro:Ntn_hydrolases_NPANTHER:PTHR11772
PANTHER:PTHR11772:SF15PFAM:PF12481SMART:SM01172SUPFAM:SSF56235UniParc:UPI00027679B8UniProt:K4BE72
MapMan:35.1:::::
Description
No Description!
Coordinates
chr3:+:1074627..1077380
Molecular Weight (calculated)
27851.2 Da
IEP (calculated)
8.044
GRAVY (calculated)
-0.156
Length
253 amino acids
Sequence
(BLAST)
001: MLAIFKNGVV DPPKELQSPA SLQASIKAAN PEETMKNFLS ANQNNGFSIG FMNKAFLAYS NPSTSYNTLS RLFCGVNDIY CIFLGNLSNL CALNKHYGLS
101: KCANEAMLVS EAYRTLRDRG PYPAHQVLKE LEGSFGFVIY DHKADTVFVA LGGDEKVKLF WGIAFDGSVM ISDNVDHIKA SCIKSFAPFP SGCMYHSETG
201: LKSYEHPSYK MKAMPRVDSE GSMCGAYFKV DVYSKVNSMP RVGSSANWAT WGQ
Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.