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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400077577 Potato cytosol 97.21 97.21
VIT_05s0020g04160.t01 Wine grape cytosol 74.9 75.5
KRH35440 Soybean cytosol, nucleus 74.5 74.8
KRG91376 Soybean cytosol, nucleus 74.5 74.8
AT3G22850.1 Thale cress cytosol 72.91 73.79
CDX92962 Canola cytosol 70.52 71.08
Bra001889.1-P Field mustard cytosol 70.12 70.68
CDY61079 Canola cytosol 70.12 70.68
GSMUA_Achr1P14100_001 Banana cytosol 69.72 70.56
GSMUA_Achr2P08920_001 Banana cytosol 68.53 69.64
GSMUA_Achr3P30980_001 Banana plastid 68.53 69.64
AT5G43830.1 Thale cress peroxisome, plastid 69.32 69.32
CDY50809 Canola peroxisome 68.92 68.92
CDY32931 Canola cytosol 68.53 68.53
Bra027506.1-P Field mustard cytosol 68.53 68.53
VIT_14s0036g00050.t01 Wine grape cytosol, extracellular, peroxisome 60.96 68.3
TraesCS5A01G438800.1 Wheat cytosol 65.34 66.4
HORVU5Hr1G105840.4 Barley cytosol 64.94 65.99
TraesCS5D01G445900.1 Wheat cytosol 64.54 65.59
EER93297 Sorghum cytosol 64.14 64.66
HORVU5Hr1G094370.1 Barley cytosol, peroxisome, plastid 64.54 64.54
TraesCS5B01G441600.1 Wheat cytosol 63.35 64.37
GSMUA_Achr4P07750_001 Banana cytosol 63.35 64.37
Os03t0744600-01 Rice plasma membrane 64.14 64.14
TraesCS5A01G383200.1 Wheat golgi, unclear 64.14 64.14
KXG37583 Sorghum plastid 64.94 63.67
TraesCS5B01G387700.1 Wheat golgi 64.54 63.53
TraesCS5D01G392600.1 Wheat peroxisome 63.74 63.49
Solyc03g006490.2.1 Tomato cytosol 46.22 45.85
Solyc12g013700.1.1 Tomato cytosol 46.22 45.67
Zm00001d033983_P001 Maize cytosol 63.74 42.78
Solyc02g078500.2.1 Tomato unclear 43.43 42.75
Solyc02g078380.2.1 Tomato extracellular, nucleus 43.03 42.69
Solyc01g079880.2.1 Tomato plastid 38.65 41.1
Solyc06g054370.1.1 Tomato cytosol, plastid 32.67 40.2
Protein Annotations
EnsemblPlants:Solyc09g082780.2.1EnsemblPlantsGene:Solyc09g082780.2Gene3D:3.60.20.10InterPro:DUF3700InterPro:IPR029055InterPro:Ntn_hydrolases_N
PANTHER:PTHR11772PANTHER:PTHR11772:SF8PFAM:PF12481SMART:SM01172SUPFAM:SSF56235UniParc:UPI000276C348
UniProt:K4CVQ4MapMan:35.1::::
Description
No Description!
Coordinates
chr9:+:68454649..68458392
Molecular Weight (calculated)
27294.0 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.235
Length
251 amino acids
Sequence
(BLAST)
001: MLAVFDKSVA KSPEALQSPN NDGAVSALKD GFLAQHFSSA HSGSVTINLG SSGFLAYSSE RQNPLLPRLF AVVDDIFCMF QGHIENVAHL KQQYGLNKTA
101: NEVIIVIEAY RTLRDRGPYP PDQVVKDIHG KFAFVLYDCA SKSTFLASDV DGCVPFFWGT DSEGHLVLSD DADIVKQGCG KSFSPFPKGC FFTSSGGLRS
201: YEHPRNELKS VPRVDSSGEV CGANFKVDPE SKKVDSGMPR VGSAANWSQH Y
Best Arabidopsis Sequence Match ( AT3G22850.1 )
(BLAST)
001: MLAIFDKNVA KTPEALQGQE GGSVCALKDR FLPNHFSSVY PGAVTINLGS SGFIACSLEK QNPLLPRLFA VVDDMFCIFQ GHIENVPILK QQYGLTKTAT
101: EVTIVIEAYR TLRDRGPYSA EQVVRDFQGK FGFMLYDCST QNVFLAGDVD GSVPLYWGTD AEGHLVVSDD VETVKKGCGK SFAPFPKGCF FTSSGGLRSY
201: EHPSNELKPV PRVDSSGEVC GVTFKVDSEA KKEAMPRVGS VQNWSKQI
Arabidopsis Description
Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q9LIL3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.