Factsheet for Solyc12g013700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g082780.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27450.1	Solyc09g082780.2.1	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03130.t01	Wine grape	cytosol	76.77	76.47
Bra010404.1-P	Field mustard	cytosol	75.2	76.4
CDX97384	Canola	cytosol	75.2	76.4
CDY14279	Canola	cytosol	75.2	76.4
CDY29312	Canola	cytosol	74.8	76.0
Bra026348.1-P	Field mustard	cytosol	74.41	75.6
CDX89248	Canola	cytosol	74.41	75.6
AT4G27450.1	Thale cress	cytosol	74.02	75.2
KRH27213	Soybean	endoplasmic reticulum	74.02	74.02
KRH22129	Soybean	nucleus	73.23	73.23
KRH26075	Soybean	endoplasmic reticulum	69.69	69.69
Solyc03g006490.2.1	Tomato	cytosol	62.6	62.85
Solyc02g078500.2.1	Tomato	unclear	62.99	62.75
Os04t0679400-01	Rice	cytosol	61.02	60.08
TraesCS2D01G600100.1	Wheat	cytosol	61.02	58.71
TraesCSU01G021600.1	Wheat	cytosol	60.63	58.33
TraesCS2A01G586500.1	Wheat	cytosol	60.63	58.33
GSMUA_Achr10P...	Banana	cytosol	61.02	58.27
GSMUA_AchrUn_...	Banana	cytosol	55.51	58.26
Zm00001d026632_P001	Maize	extracellular	60.63	58.11
GSMUA_Achr3P14300_001	Banana	cytosol	60.24	57.74
EES13111	Sorghum	cytosol, plastid	59.06	57.03
Solyc09g082780.2.1	Tomato	nucleus	45.67	46.22
Solyc02g078380.2.1	Tomato	extracellular, nucleus	41.73	41.9
Solyc01g079880.2.1	Tomato	plastid	37.8	40.68
Solyc06g054370.1.1	Tomato	cytosol, plastid	30.71	38.24
HORVU2Hr1G118550.2	Barley	cytosol	36.61	37.96
HORVU2Hr1G118570.2	Barley	cytosol	24.8	23.25

Protein Annotations

Gene3D:3.60.20.10	MapMan:35.1	InterPro:DUF3700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0009506	GO:GO:0016020
InterPro:IPR029055	UniProt:K4DCQ5	InterPro:Ntn_hydrolases_N	PFAM:PF12481	PANTHER:PTHR11772	PANTHER:PTHR11772:SF15
SMART:SM01172	SUPFAM:SSF56235	EnsemblPlantsGene:Solyc12g013700.1	EnsemblPlants:Solyc12g013700.1.1	UniParc:UPI000276A4B0	:

Description

No Description!

Coordinates

chr12:+:4542236..4544315

Molecular Weight (calculated)

28178.8 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.104

Length

254 amino acids

Sequence
(BLAST)

001: MLAIFHKAFA HPPEELNSPA SKKCLLPQQT LQKFVSTRPF DTSYVTFGDV AALAFVRPNC TSLLNHKQRY FCGYDDIYCL FMGSLNNLCA QIKQYGLSPK
101: GTNEAMLVIE AYRTLRDRGP YPADQVIKDF EGSFAFVIYD SKTGTVFVAL GSDGGVKLFW GIAADGSVVI SDDVEVIKAG CAKSFAPFPT GCMFHSEKGL
201: MNFEHPMNKM RAMPRVDSEG VMCGANFKVD MYSRVNSIPR VGSEANWSDW NTSY

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.