Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G074990.1 | |
| HORVU3Hr1G075340.1 | |
| HORVU5Hr1G094370.1 | |
| HORVU5Hr1G105840.4 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 16.61 | 50.0 |
| CDY21375 | Canola | cytosol | 14.02 | 49.35 |
| CDY61102 | Canola | cytosol | 14.39 | 46.99 |
| CDY07847 | Canola | cytosol | 12.92 | 41.18 |
| Bra037807.1-P | Field mustard | cytosol | 14.39 | 39.0 |
| Os04t0679400-01 | Rice | cytosol | 32.1 | 33.72 |
| EES13111 | Sorghum | cytosol, plastid | 31.0 | 31.94 |
| Zm00001d026632_P001 | Maize | extracellular | 30.26 | 30.94 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 25.83 | 26.42 |
| KRH27213 | Soybean | endoplasmic reticulum | 24.72 | 26.38 |
| KRH22129 | Soybean | nucleus | 24.72 | 26.38 |
| VIT_19s0014g03130.t01 | Wine grape | cytosol | 24.72 | 26.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.25 | 26.03 |
| CDY21841 | Canola | plastid | 19.19 | 25.87 |
| GSMUA_Achr10P... | Banana | cytosol | 25.09 | 25.56 |
| VIT_00s0586g00030.t01 | Wine grape | cytosol | 23.99 | 25.39 |
| CDY20112 | Canola | cytosol | 23.25 | 24.9 |
| CDX97669 | Canola | cytosol | 23.25 | 24.9 |
| CDY56826 | Canola | cytosol | 23.25 | 24.9 |
| Bra027243.1-P | Field mustard | cytosol | 23.25 | 24.9 |
| AT3G15450.1 | Thale cress | cytosol | 23.25 | 24.9 |
| Solyc12g013700.1.1 | Tomato | cytosol | 23.25 | 24.8 |
| CDY53810 | Canola | cytosol | 22.88 | 24.51 |
| Bra019002.1-P | Field mustard | cytosol | 22.88 | 24.51 |
| Bra021110.1-P | Field mustard | cytosol | 22.88 | 24.51 |
| VIT_00s0561g00020.t01 | Wine grape | cytosol | 23.99 | 24.44 |
| KRH26075 | Soybean | endoplasmic reticulum | 22.88 | 24.41 |
| AT4G27450.1 | Thale cress | cytosol | 22.51 | 24.4 |
| Bra026348.1-P | Field mustard | cytosol | 22.51 | 24.4 |
| CDY29312 | Canola | cytosol | 22.51 | 24.4 |
| CDX89248 | Canola | cytosol | 22.51 | 24.4 |
| CDY26025 | Canola | cytosol | 22.51 | 24.11 |
| CDY14279 | Canola | cytosol | 22.14 | 24.0 |
| Bra010404.1-P | Field mustard | cytosol | 22.14 | 24.0 |
| CDX97384 | Canola | cytosol | 22.14 | 24.0 |
| PGSC0003DMT400057793 | Potato | cytosol | 22.51 | 23.92 |
| Solyc02g078500.2.1 | Tomato | unclear | 22.51 | 23.92 |
| PGSC0003DMT400033379 | Potato | cytosol | 22.14 | 23.72 |
| Solyc03g006490.2.1 | Tomato | cytosol | 21.77 | 23.32 |
| KRH21498 | Soybean | cytosol | 21.4 | 23.11 |
| KRH10843 | Soybean | nucleus | 21.4 | 23.11 |
| KRH10823 | Soybean | cytosol | 21.4 | 23.11 |
| KRH20474 | Soybean | nucleus | 20.3 | 21.4 |
| HORVU5Hr1G094370.1 | Barley | cytosol, peroxisome, plastid | 19.19 | 20.72 |
| HORVU5Hr1G105840.4 | Barley | cytosol | 16.24 | 17.81 |
| KRH50016 | Soybean | cytosol, nucleus, plastid | 19.19 | 16.56 |
| HORVU5Hr1G040970.1 | Barley | cytosol | 12.55 | 14.41 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 10.7 | 11.84 |
| KRH33539 | Soybean | cytosol | 6.27 | 10.56 |
| KRH63496 | Soybean | cytosol | 6.27 | 8.85 |
| KRG89645 | Soybean | cytosol | 5.54 | 7.73 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G118570.2 | EnsemblPlantsGene:HORVU2Hr1G118570 | InterPro:DUF3700 | ncoils:Coil | PANTHER:PTHR11772 | PANTHER:PTHR11772:SF15 |
| PFAM:PF12481 | SEG:seg | SMART:SM01172 | UniParc:UPI000B48624E | UniProt:A0A287JMA0 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr2H:-:742810590..742811755
Molecular Weight (calculated)
10332.4 Da
IEP (calculated)
8.080
GRAVY (calculated)
-0.066
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIFQKQVA HAPQELNXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAGCGRSY
201: APFPPGCMFH SEGGLKSFEH PMNRLKAFPR VDSEGVMCGA NFKVDAFTKI NSMPRVGSAT NWAATWDDAA I
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAGCGRSY
201: APFPPGCMFH SEGGLKSFEH PMNRLKAFPR VDSEGVMCGA NFKVDAFTKI NSMPRVGSAT NWAATWDDAA I
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.