Factsheet for GSMUA_Achr3P14300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P14100_001
GSMUA_Achr2P08220_001
GSMUA_Achr2P08920_001
GSMUA_Achr3P30980_001
GSMUA_Achr4P07750_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15450.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT3G15450.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT3G15450.1	GSMUA_Achr1P14100_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr2P08920_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr3P30980_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr4P07750_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr1P14100_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr2P08920_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr3P30980_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr4P07750_001	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	77.36	77.07
GSMUA_AchrUn_...	Banana	cytosol	68.68	75.21
Os04t0679400-01	Rice	cytosol	70.19	72.09
Zm00001d026632_P001	Maize	extracellular	69.06	69.06
TraesCS2D01G600100.1	Wheat	cytosol	67.92	68.18
TraesCS2A01G586500.1	Wheat	cytosol	67.55	67.8
EES13111	Sorghum	cytosol, plastid	67.17	67.68
TraesCSU01G021600.1	Wheat	cytosol	67.17	67.42
VIT_19s0014g03130.t01	Wine grape	cytosol	62.26	64.71
KRH27213	Soybean	endoplasmic reticulum	61.51	64.17
KRH22129	Soybean	nucleus	61.51	64.17
CDY29312	Canola	cytosol	60.38	64.0
AT4G27450.1	Thale cress	cytosol	60.0	63.6
Bra026348.1-P	Field mustard	cytosol	60.0	63.6
CDX97384	Canola	cytosol	60.0	63.6
CDX89248	Canola	cytosol	60.0	63.6
CDY14279	Canola	cytosol	59.25	62.8
Bra010404.1-P	Field mustard	cytosol	59.25	62.8
KRH26075	Soybean	endoplasmic reticulum	59.62	62.2
Solyc12g013700.1.1	Tomato	cytosol	57.74	60.24
VIT_00s0586g00030.t01	Wine grape	cytosol	56.6	58.59
CDY56826	Canola	cytosol	55.85	58.5
KRH10843	Soybean	nucleus	55.09	58.17
AT3G15450.1	Thale cress	cytosol	55.47	58.1
CDX97669	Canola	cytosol	55.47	58.1
CDY21841	Canola	plastid	43.77	57.71
CDY20112	Canola	cytosol	55.09	57.71
Bra021110.1-P	Field mustard	cytosol	55.09	57.71
Bra027243.1-P	Field mustard	cytosol	55.09	57.71
CDY53810	Canola	cytosol	55.09	57.71
Bra019002.1-P	Field mustard	cytosol	54.72	57.31
KRH10823	Soybean	cytosol	53.96	56.97
KRH21498	Soybean	cytosol	53.96	56.97
CDY26025	Canola	cytosol	54.34	56.92
VIT_00s0561g00020.t01	Wine grape	cytosol	56.6	56.39
KRH20474	Soybean	nucleus	53.58	55.25
PGSC0003DMT400033379	Potato	cytosol	51.32	53.75
KRH33539	Soybean	cytosol	32.45	53.42
PGSC0003DMT400057793	Potato	cytosol	51.32	53.33
Solyc03g006490.2.1	Tomato	cytosol	50.57	52.96
Solyc02g078500.2.1	Tomato	unclear	50.57	52.55
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	17.74	52.22
KRH63496	Soybean	cytosol	37.74	52.08
CDY61102	Canola	cytosol	15.85	50.6
CDY21375	Canola	cytosol	13.96	48.05
HORVU2Hr1G118550.2	Barley	cytosol	43.77	47.35
CDY07847	Canola	cytosol	15.09	47.06
KRG89645	Soybean	cytosol	33.96	46.39
GSMUA_Achr3P30980_001	Banana	plastid	43.02	46.15
GSMUA_Achr1P14100_001	Banana	cytosol	41.89	44.76
GSMUA_Achr2P08920_001	Banana	cytosol	41.51	44.53
Bra037807.1-P	Field mustard	cytosol	16.6	44.0
GSMUA_Achr4P07750_001	Banana	cytosol	40.75	43.72
KRH50016	Soybean	cytosol, nucleus, plastid	51.32	43.31
GSMUA_Achr8P08600_001	Banana	cytosol	35.09	39.41
GSMUA_Achr8P00370_001	Banana	cytosol	35.09	39.41
GSMUA_Achr10P...	Banana	cytosol	35.85	36.97
GSMUA_Achr11P...	Banana	cytosol	32.08	36.8
HORVU2Hr1G118570.2	Barley	cytosol	26.42	25.83

Protein Annotations

EnsemblPlants:GSMUA_Achr3P14300_001	EnsemblPlants:GSMUA_Achr3T14300_001	EnsemblPlantsGene:GSMUA_Achr3G14300_001	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF14	PFAM:PF12481	SEG:seg	SMART:SM01172
SUPFAM:SSF56235	UniParc:UPI000296D5FB	UniProt:M0SEJ7	MapMan:35.1	:	:

Description

Putative Stem-specific protein TSJT1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G14300_001]

Coordinates

chr3:-:13462608..13464018

Molecular Weight (calculated)

28715.9 Da

IEP (calculated)

7.440

GRAVY (calculated)

-0.183

Length

265 amino acids

Sequence
(BLAST)

001: MLGIFHKAVA QAPQELHSPE SAAGIPPKSG SVRRQPKNPD EILRDFHAAY SGQSFSASFS GGAALACVGP RAPRPSFHQR LFCSYDEVYC MFVGSLGNLS
101: ALIRQYGLCS KSTNEALLVI EAYRTLRDRG PYPADQVVKD FSGSFAFVVY DNKTSTVFAA LSSDGGIPLY WGVAADSSIV ICDDREITKE SCGKSYAPFP
201: TGCMFHSDGG LRSFEHPLNR LKAMPRVDSE GVMCGASFKV DTFAKINSMP RVGSAADWTS WDNSH

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.