Factsheet for GSMUA_Achr8P00370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P21610_001
GSMUA_Achr3P02160_001
GSMUA_Achr3P07440_001
GSMUA_Achr6P05910_001
GSMUA_Achr7P11160_001
GSMUA_Achr8P23000_001
GSMUA_Achr9P15690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19140.1	GSMUA_Achr10P...	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr2P21610_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr3P02160_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr3P07440_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr6P05910_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr7P11160_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr8P23000_001	AT3G17840.1	15618630
AT5G19140.1	GSMUA_Achr9P15690_001	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08600_001	Banana	cytosol	92.8	92.8
TraesCS5A01G134000.1	Wheat	golgi	78.81	78.81
TraesCS5D01G139300.1	Wheat	golgi, unclear	78.39	78.39
TraesCS5B01G131500.1	Wheat	golgi	77.97	77.97
Os11t0147800-01	Rice	cytosol	76.27	75.95
HORVU5Hr1G040970.1	Barley	cytosol	75.85	75.85
Zm00001d023376_P002	Maize	extracellular	76.27	75.63
Os12t0145100-01	Rice	cytosol, plastid	76.27	75.63
EES09256	Sorghum	cytosol	75.85	75.21
KXG22952	Sorghum	cytosol, plastid	76.27	73.47
KRH20897	Soybean	nucleus	69.92	69.92
AT5G19140.1	Thale cress	plastid	68.22	68.8
Bra023707.1-P	Field mustard	cytosol	48.73	68.45
PGSC0003DMT400023208	Potato	plastid	67.37	67.37
KRH02111	Soybean	cytosol	67.37	67.37
KRH51038	Soybean	plastid	66.95	67.23
CDY02581	Canola	cytosol	66.53	67.09
CDY47200	Canola	cytosol	66.53	67.09
Solyc01g079880.2.1	Tomato	plastid	66.53	66.53
CDY59022	Canola	cytosol	65.25	65.81
CDX88900	Canola	cytosol	65.25	65.81
CDY13981	Canola	cytosol	65.68	65.68
CDX92551	Canola	cytosol	65.68	65.68
Bra002216.1-P	Field mustard	cytosol	65.25	65.25
GSMUA_Achr11P...	Banana	cytosol	62.29	63.64
Solyc06g054370.1.1	Tomato	cytosol, plastid	54.24	62.75
CDY59012	Canola	cytosol	64.83	60.47
KRH11390	Soybean	nucleus	70.34	56.66
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	63.14	54.98
GSMUA_Achr10P...	Banana	cytosol	58.47	53.7
Zm00001d052493_P001	Maize	plastid	73.73	48.07
KRH38367	Soybean	extracellular	23.31	45.45
GSMUA_Achr1P14100_001	Banana	cytosol	46.19	43.95
GSMUA_Achr2P08920_001	Banana	cytosol	45.76	43.72
GSMUA_Achr3P30980_001	Banana	plastid	44.49	42.51
GSMUA_Achr4P07750_001	Banana	cytosol	41.1	39.27
GSMUA_Achr10P...	Banana	cytosol	40.68	36.09
GSMUA_Achr3P14300_001	Banana	cytosol	39.41	35.09
GSMUA_AchrUn_...	Banana	cytosol	34.32	33.47
CDY32292	Canola	plasma membrane	28.39	30.32
CDX80239	Canola	vacuole	27.97	28.45

Protein Annotations

EnsemblPlants:GSMUA_Achr8P00370_001	EnsemblPlants:GSMUA_Achr8T00370_001	EnsemblPlantsGene:GSMUA_Achr8G00370_001	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF18	PFAM:PF12481	SEG:seg	SMART:SM01172
SUPFAM:SSF56235	UniParc:UPI0002952FD2	UniProt:M0TLD9	MapMan:35.1	:	:

Description

Putative Stem-specific protein TSJT1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00370_001]

Coordinates

chr8:+:320256..323032

Molecular Weight (calculated)

25286.3 Da

IEP (calculated)

5.682

GRAVY (calculated)

0.075

Length

236 amino acids

Sequence
(BLAST)

001: MLGVFSGEVV EVPEELVVAG SRTPSPKTRA AELMNRFLGS SAPAVSIQLG YLGHLAYSHT NQSPFAPRMF AAKDEIYCLF EGVLTNLGSL RQQYGLSKSA
101: NEVVLVMEAY KALRDRAPYP PSFMLAHLSG NFAFVLFDKS TSSILVASDP DGRVPLFWGI TADGCLAFAD DLDLLKGSCG KSLAPFPKGC YYSNALGGLK
201: SYENPKHKVT AVLENEEEVC GATFKVEGSA VVAATQ

Best Arabidopsis Sequence Match ( AT5G19140.1 )
(BLAST)

001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD

Arabidopsis Description

ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.