CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 1
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39040
KRH41871
KRH48661
KRH60559

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19140.1	KRH39040	AT3G17840.1	15618630
AT5G19140.1	KRH41871	AT3G17840.1	15618630
AT5G19140.1	KRH48661	AT3G17840.1	15618630
AT5G19140.1	KRH60559	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20897	Soybean	nucleus	78.84	97.88
KRH51038	Soybean	plastid	68.94	85.96
KRH02111	Soybean	cytosol	68.6	85.17
Solyc01g079880.2.1	Tomato	plastid	66.89	83.05
PGSC0003DMT400023208	Potato	plastid	66.89	83.05
AT5G19140.1	Thale cress	plastid	66.21	82.91
Bra023707.1-P	Field mustard	cytosol	47.44	82.74
CDY02581	Canola	cytosol	65.87	82.48
CDY47200	Canola	cytosol	65.53	82.05
CDX88900	Canola	cytosol	64.85	81.2
CDY59022	Canola	cytosol	64.51	80.77
CDX92551	Canola	cytosol	64.85	80.51
CDY13981	Canola	cytosol	64.85	80.51
Bra002216.1-P	Field mustard	cytosol	64.51	80.08
CDY59012	Canola	cytosol	64.85	75.1
Solyc06g054370.1.1	Tomato	cytosol, plastid	51.88	74.51
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	65.19	70.48
GSMUA_Achr8P00370_001	Banana	cytosol	56.66	70.34
GSMUA_Achr8P08600_001	Banana	cytosol	56.31	69.92
TraesCS5A01G134000.1	Wheat	golgi	56.31	69.92
Os12t0145100-01	Rice	cytosol, plastid	56.66	69.75
TraesCS5D01G139300.1	Wheat	golgi, unclear	55.97	69.49
HORVU5Hr1G040970.1	Barley	cytosol	55.97	69.49
Os11t0147800-01	Rice	cytosol	55.97	69.2
TraesCS5B01G131500.1	Wheat	golgi	55.63	69.07
Zm00001d023376_P002	Maize	extracellular	54.95	67.65
EES09256	Sorghum	cytosol	54.61	67.23
KXG22952	Sorghum	cytosol, plastid	53.58	64.08
KRH38367	Soybean	extracellular	24.57	59.5
GSMUA_Achr11P...	Banana	cytosol	41.64	52.81
KRH21458	Soybean	cytosol	23.21	52.71
Zm00001d052493_P001	Maize	plastid	56.31	45.58
KRH35440	Soybean	cytosol, nucleus	35.49	41.6
KRG91376	Soybean	cytosol, nucleus	35.15	41.2
KRH26075	Soybean	endoplasmic reticulum	35.49	40.94
KRH22129	Soybean	nucleus	35.49	40.94
KRH27213	Soybean	endoplasmic reticulum	35.15	40.55
KRH63496	Soybean	cytosol	25.26	38.54
KRH21498	Soybean	cytosol	32.76	38.25
KRH33539	Soybean	cytosol	20.82	37.89
KRH10823	Soybean	cytosol	32.42	37.85
KRH10843	Soybean	nucleus	32.08	37.45
CDY32292	Canola	plasma membrane	27.99	37.1
KRH10856	Soybean	cytosol	31.4	36.22
KRH20474	Soybean	nucleus	31.74	36.19
CDX80239	Canola	vacuole	27.65	34.91
KRG89645	Soybean	cytosol	22.87	34.54
KRH50016	Soybean	cytosol, nucleus, plastid	34.13	31.85

Protein Annotations

EMBL:ACUP02009208	EnsemblPlants:KRH11390	EnsemblPlantsGene:GLYMA_15G105100	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF18	PFAM:PF12481	ProteinID:KRH11390	ProteinID:KRH11390.1
SEG:seg	SMART:SM01172	SUPFAM:SSF56235	UniParc:UPI000294F187	UniProt:K7MAQ4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr15:+:8240990..8246519

Molecular Weight (calculated)

32129.3 Da

IEP (calculated)

6.777

GRAVY (calculated)

0.001

Length

293 amino acids

Sequence
(BLAST)

001: MTELPPFLLF ITKRRLLVQF LSHSPSGVLS CETERAKGQT QFFLSSFLFF VEREREKMLG IFSSSVVSPP EELVAAGSRT PSPKTTAGKL LNRFVESKAS
101: AVSLQVGEHV QLAYTHHNES PWHPRSFAVK DEIFCLFEGA LDNLGSLRQQ YGLAKSANEV ILVIEAYKAL RDRAPYPANR VVCHLSGSFA FIVFDKSTST
201: LFVASDQAGK VPLYWGITAD GYVAFADDAD LLKGSCGKSL ASFPQGCFYS TAVGGLRCYE NPKNKITAVP AEEEEIWGAF FKVEGSTVLA ATE

Best Arabidopsis Sequence Match ( AT5G19140.1 )
(BLAST)

001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD

Arabidopsis Description

ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.