Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19140.1 | CDX92167 | AT3G17840.1 | 15618630 |
| AT5G19140.1 | CDX95816 | AT3G17840.1 | 15618630 |
| AT5G19140.1 | CDY61284 | AT3G17840.1 | 15618630 |
| AT5G19140.1 | CDY67567 | AT3G17840.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80239 | Canola | vacuole | 92.76 | 88.36 |
| Bra023707.1-P | Field mustard | cytosol | 36.65 | 48.21 |
| CDY47200 | Canola | cytosol | 40.72 | 38.46 |
| CDY02581 | Canola | cytosol | 40.72 | 38.46 |
| CDY13981 | Canola | cytosol | 40.72 | 38.14 |
| CDX92551 | Canola | cytosol | 40.72 | 38.14 |
| AT5G19140.1 | Thale cress | plastid | 40.27 | 38.03 |
| CDY59022 | Canola | cytosol | 39.82 | 37.61 |
| CDX88900 | Canola | cytosol | 39.82 | 37.61 |
| CDY59012 | Canola | cytosol | 39.82 | 34.78 |
| KRH51038 | Soybean | plastid | 34.84 | 32.77 |
| KRH20897 | Soybean | nucleus | 34.84 | 32.63 |
| Solyc06g054370.1.1 | Tomato | cytosol, plastid | 29.86 | 32.35 |
| KRH02111 | Soybean | cytosol | 34.39 | 32.2 |
| Solyc01g079880.2.1 | Tomato | plastid | 33.94 | 31.78 |
| PGSC0003DMT400023208 | Potato | plastid | 33.48 | 31.36 |
| TraesCS5B01G131500.1 | Wheat | golgi | 33.03 | 30.93 |
| HORVU5Hr1G040970.1 | Barley | cytosol | 32.58 | 30.51 |
| TraesCS5D01G139300.1 | Wheat | golgi, unclear | 32.58 | 30.51 |
| TraesCS5A01G134000.1 | Wheat | golgi | 32.58 | 30.51 |
| EES09256 | Sorghum | cytosol | 32.58 | 30.25 |
| Os12t0145100-01 | Rice | cytosol, plastid | 32.58 | 30.25 |
| Os11t0147800-01 | Rice | cytosol | 32.13 | 29.96 |
| Zm00001d023376_P002 | Maize | extracellular | 31.22 | 28.99 |
| VIT_05s0020g02770.t01 | Wine grape | cytosol, plastid | 35.29 | 28.78 |
| GSMUA_Achr8P08600_001 | Banana | cytosol | 30.32 | 28.39 |
| GSMUA_Achr8P00370_001 | Banana | cytosol | 30.32 | 28.39 |
| KRH11390 | Soybean | nucleus | 37.1 | 27.99 |
| KXG22952 | Sorghum | cytosol, plastid | 30.32 | 27.35 |
| GSMUA_Achr11P... | Banana | cytosol | 23.98 | 22.94 |
| CDX97669 | Canola | cytosol | 26.24 | 22.92 |
| CDY56826 | Canola | cytosol | 26.24 | 22.92 |
| CDY21841 | Canola | plastid | 20.81 | 22.89 |
| CDY53810 | Canola | cytosol | 25.79 | 22.53 |
| CDY26025 | Canola | cytosol | 25.34 | 22.13 |
| CDX89248 | Canola | cytosol | 24.89 | 22.0 |
| CDY29312 | Canola | cytosol | 24.89 | 22.0 |
| CDY20112 | Canola | cytosol | 24.89 | 21.74 |
| CDX97384 | Canola | cytosol | 24.43 | 21.6 |
| CDY14279 | Canola | cytosol | 24.43 | 21.6 |
| CDY61079 | Canola | cytosol | 22.62 | 20.08 |
| CDX92962 | Canola | cytosol | 22.62 | 20.08 |
| CDY32931 | Canola | cytosol | 22.62 | 19.92 |
| CDY50809 | Canola | peroxisome | 22.62 | 19.92 |
| Zm00001d052493_P001 | Maize | plastid | 32.13 | 19.61 |
| CDX87121 | Canola | cytosol | 16.29 | 16.22 |
| CDX76924 | Canola | mitochondrion | 5.43 | 6.03 |
| KRH38367 | Soybean | extracellular | 3.17 | 5.79 |
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 2.26 | 5.56 |
| CDY21375 | Canola | cytosol | 1.81 | 5.19 |
| CDY61102 | Canola | cytosol | 0.9 | 2.41 |
| CDY07847 | Canola | cytosol | 0.9 | 2.35 |
Protein Annotations
| EnsemblPlants:CDY32292 | EnsemblPlantsGene:GSBRNA2T00051761001 | InterPro:DUF3700 | PANTHER:PTHR11772 | PANTHER:PTHR11772:SF18 | PFAM:PF12481 |
| ProteinID:CDY32292 | ProteinID:CDY32292.1 | SEG:seg | SMART:SM01172 | UniParc:UPI0004EE5F09 | UniProt:A0A078H465 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC05g28700DBnaC05g28700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H465]
Coordinates
chrLK032291:+:247133..248771
Molecular Weight (calculated)
24497.5 Da
IEP (calculated)
5.337
GRAVY (calculated)
-0.047
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETSLLFLS SPSSLGLPLF LSVQYIDEVW SDKNPILPSD PYRRALTGKF GGGGDTLVAM TKKKTPQILK TDTALKLWVA NMSMPAEDDP IEAQQEARPP
101: RKLEANMSLQ RLQTECRLIY ELLLCLTFLA YACLKDGSFG AKDEISCLFQ CSLDNLGSLK QQYGLAKNAN EVLLVIEAYK TLRDRAPYPA NHVVSHLSGD
201: FAFVVFDKST STLFVASVNS F
101: RKLEANMSLQ RLQTECRLIY ELLLCLTFLA YACLKDGSFG AKDEISCLFQ CSLDNLGSLK QQYGLAKNAN EVLLVIEAYK TLRDRAPYPA NHVVSHLSGD
201: FAFVVFDKST STLFVASVNS F
001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD
Arabidopsis Description
ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.