CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32931	Canola	cytosol	31.08	27.49
CDY50809	Canola	peroxisome	31.08	27.49
CDY29312	Canola	cytosol	29.73	26.4
CDX89248	Canola	cytosol	29.28	26.0
CDY14279	Canola	cytosol	29.28	26.0
CDY61079	Canola	cytosol	28.83	25.7
CDY02581	Canola	cytosol	27.03	25.64
CDY47200	Canola	cytosol	27.03	25.64
CDY59022	Canola	cytosol	27.03	25.64
CDY13981	Canola	cytosol	27.03	25.42
CDX92551	Canola	cytosol	27.03	25.42
CDX92962	Canola	cytosol	28.38	25.3
CDX88900	Canola	cytosol	26.58	25.21
CDX97384	Canola	cytosol	28.38	25.2
CDY21841	Canola	plastid	22.07	24.38
CDY53810	Canola	cytosol	27.03	23.72
CDY21375	Canola	cytosol	8.11	23.38
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	9.46	23.33
CDY59012	Canola	cytosol	26.58	23.32
CDY26025	Canola	cytosol	26.13	22.92
CDY20112	Canola	cytosol	26.13	22.92
CDX97669	Canola	cytosol	26.13	22.92
CDY56826	Canola	cytosol	25.68	22.53
CDY61102	Canola	cytosol	7.21	19.28
CDY07847	Canola	cytosol	6.76	17.65
CDX80239	Canola	vacuole	17.12	16.38
CDY32292	Canola	plasma membrane	16.22	16.29
CDX76924	Canola	mitochondrion	9.01	10.05

Protein Annotations

EnsemblPlants:CDX87121	EnsemblPlantsGene:GSBRNA2T00146026001	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PANTHER:PTHR11772	PANTHER:PTHR11772:SF8	PFAM:PF12481	ProteinID:CDX87121	ProteinID:CDX87121.1	SMART:SM01172
SUPFAM:SSF56235	UniParc:UPI0004EF19E9	MapMan:35.2	:	:	:

Description

BnaC09g04360D

Coordinates

chrLK031849:+:584558..585622

Molecular Weight (calculated)

24735.7 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.093

Length

222 amino acids

Sequence
(BLAST)

001: MLAVFHKSLA EPSVKLMGAV VFENPPTEQS EETMKELSRL FKDEHHDPMA IHLLPYCILN TALDHQSVVT PSVLTVKDDV VCLFRGTFEN RAEIATLYKL
101: PTPKNDSAVV IWAYNKFCNQ EDETEWLDAV KGFKGGFSFV MYDAKKKTLF VTSGLDGIPC FWGLGPQGTI LFSSCLEIAS TKCESFYGQL PKGCYYASGK
201: GLRSFESPDV VLKAQFVPPD NQ

Best Arabidopsis Sequence Match ( AT5G43830.1 )
(BLAST)

001: MLAVFEKTVA NSPEALQSPH SSESAFALKD GSLATHFASV NPNSVTLNFG SSGFVAYSLD NPDPRVPRLF AVVDDIFCLF QGHIENLPFL KQQYGLNKIT
101: NEAIIVIEAY RTLRDRGPYP VDKVVRDFHG KFAFILFDSV KKTVFAAADA DGSVPFFWGT DAEGHLVFSD NTEMVKKGCA KSYGPFPKGC FFTSSGGLRS
201: FEHPKNELKP VPRVDSSGDV CGATFKVDAE TKREGTKMPR VDSSQNWAGH I

Arabidopsis Description

Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q9FG81]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.