Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid, vacuole, mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 2
- plastid 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21375 | Canola | cytosol | 64.44 | 75.32 |
| CDY61102 | Canola | cytosol | 67.78 | 73.49 |
| CDY07847 | Canola | cytosol | 61.11 | 64.71 |
| CDY20112 | Canola | cytosol | 70.0 | 24.9 |
| CDY56826 | Canola | cytosol | 67.78 | 24.11 |
| CDX97669 | Canola | cytosol | 67.78 | 24.11 |
| AT3G15450.1 | Thale cress | cytosol | 65.56 | 23.32 |
| CDY53810 | Canola | cytosol | 65.56 | 23.32 |
| CDY21841 | Canola | plastid | 51.11 | 22.89 |
| CDY26025 | Canola | cytosol | 63.33 | 22.53 |
| CDX89248 | Canola | cytosol | 60.0 | 21.6 |
| CDY29312 | Canola | cytosol | 60.0 | 21.6 |
| CDX97384 | Canola | cytosol | 58.89 | 21.2 |
| CDY14279 | Canola | cytosol | 58.89 | 21.2 |
| KRH21498 | Soybean | cytosol | 57.78 | 20.72 |
| KRH10823 | Soybean | cytosol | 56.67 | 20.32 |
| KRH10843 | Soybean | nucleus | 56.67 | 20.32 |
| VIT_00s0586g00030.t01 | Wine grape | cytosol | 57.78 | 20.31 |
| VIT_00s0561g00020.t01 | Wine grape | cytosol | 57.78 | 19.55 |
| Os04t0679400-01 | Rice | cytosol | 53.33 | 18.6 |
| Solyc02g078500.2.1 | Tomato | unclear | 52.22 | 18.43 |
| KRH20474 | Soybean | nucleus | 52.22 | 18.29 |
| PGSC0003DMT400057793 | Potato | cytosol | 51.11 | 18.04 |
| EES13111 | Sorghum | cytosol, plastid | 52.22 | 17.87 |
| TraesCS2A01G586500.1 | Wheat | cytosol | 52.22 | 17.8 |
| TraesCS2D01G600100.1 | Wheat | cytosol | 52.22 | 17.8 |
| TraesCSU01G021600.1 | Wheat | cytosol | 52.22 | 17.8 |
| Solyc03g006490.2.1 | Tomato | cytosol | 50.0 | 17.79 |
| PGSC0003DMT400033379 | Potato | cytosol | 50.0 | 17.79 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 52.22 | 17.74 |
| Zm00001d026632_P001 | Maize | extracellular | 52.22 | 17.74 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.67 | 17.36 |
| HORVU2Hr1G118570.2 | Barley | cytosol | 50.0 | 16.61 |
| GSMUA_Achr10P... | Banana | cytosol | 47.78 | 16.17 |
| CDY32931 | Canola | cytosol | 42.22 | 15.14 |
| CDY61079 | Canola | cytosol | 41.11 | 14.86 |
| CDX92962 | Canola | cytosol | 41.11 | 14.86 |
| CDY50809 | Canola | peroxisome | 41.11 | 14.74 |
| KRH50016 | Soybean | cytosol, nucleus, plastid | 48.89 | 14.01 |
| CDY59022 | Canola | cytosol | 34.44 | 13.25 |
| CDY47200 | Canola | cytosol | 34.44 | 13.25 |
| CDY02581 | Canola | cytosol | 34.44 | 13.25 |
| CDX88900 | Canola | cytosol | 34.44 | 13.25 |
| CDY13981 | Canola | cytosol | 33.33 | 12.71 |
| CDX92551 | Canola | cytosol | 33.33 | 12.71 |
| CDY59012 | Canola | cytosol | 34.44 | 12.25 |
| CDX87121 | Canola | cytosol | 23.33 | 9.46 |
| KRH33539 | Soybean | cytosol | 14.44 | 8.07 |
| KRG89645 | Soybean | cytosol | 16.67 | 7.73 |
| KRH63496 | Soybean | cytosol | 15.56 | 7.29 |
| CDX76924 | Canola | mitochondrion | 13.33 | 6.03 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 8.89 | 3.27 |
| CDY32292 | Canola | plasma membrane | 5.56 | 2.26 |
| CDX80239 | Canola | vacuole | 5.56 | 2.16 |
Protein Annotations
| EnsemblPlants:CDX71441 | EnsemblPlantsGene:GSBRNA2T00148291001 | InterPro:DUF3700 | PANTHER:PTHR11772 | PANTHER:PTHR11772:SF15 | PFAM:PF12481 |
| ProteinID:CDX71441 | ProteinID:CDX71441.1 | UniParc:UPI0004EDBF95 | MapMan:35.2 | : | : |
Description
BnaC04g16760D
Coordinates
chrLK031793:+:900838..902581
Molecular Weight (calculated)
10038.0 Da
IEP (calculated)
7.847
GRAVY (calculated)
-0.202
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MCYNCLPNYL IPSYFKRCAK SFAPFPTGSM YHSEIGLTSF EHPENNIKAM PMIDSEGVIC GANFQVDACT KINAIPRRGT EANWALANTR
001: MLAIFQKAFA HPPEELNSPA SHFSGKTPKL PGETLSDFLS HHQNNAFSMN FGDSAVLAYA RQETSLRQRL FCGLDGIYCM FLGRLNNLCT LNRQYGLSGK
101: NSNEAMFVIE AYRTLRDRGP YPADQVLRGL EGSFAFVVYD TQTSSVFSAL SSDGGESLYW GISGDGSVVM SDDIQIIKQG CAKSFAPFPN GCMFHSETGL
201: KSFDHPTNMM KAMPRIDSEG VLCGASFKVD ACSKINSIPR RGSEANWALA NSR
101: NSNEAMFVIE AYRTLRDRGP YPADQVLRGL EGSFAFVVYD TQTSSVFSAL SSDGGESLYW GISGDGSVVM SDDIQIIKQG CAKSFAPFPN GCMFHSETGL
201: KSFDHPTNMM KAMPRIDSEG VLCGASFKVD ACSKINSIPR RGSEANWALA NSR
Arabidopsis Description
Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q9LE80]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.