Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G586500.1 | Wheat | cytosol | 97.73 | 97.73 |
| TraesCS2D01G600100.1 | Wheat | cytosol | 97.35 | 97.35 |
| Os04t0679400-01 | Rice | cytosol | 83.33 | 85.27 |
| EES13111 | Sorghum | cytosol, plastid | 79.92 | 80.23 |
| Zm00001d026632_P001 | Maize | extracellular | 79.17 | 78.87 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 63.64 | 68.57 |
| GSMUA_Achr10P... | Banana | cytosol | 68.94 | 68.42 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 67.42 | 67.17 |
| VIT_19s0014g03130.t01 | Wine grape | cytosol | 64.39 | 66.67 |
| KRH27213 | Soybean | endoplasmic reticulum | 61.74 | 64.17 |
| KRH22129 | Soybean | nucleus | 61.36 | 63.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.58 | 62.81 |
| Bra026348.1-P | Field mustard | cytosol | 59.47 | 62.8 |
| CDX89248 | Canola | cytosol | 59.47 | 62.8 |
| CDY29312 | Canola | cytosol | 59.47 | 62.8 |
| AT4G27450.1 | Thale cress | cytosol | 59.09 | 62.4 |
| KRH26075 | Soybean | endoplasmic reticulum | 59.85 | 62.2 |
| CDY14279 | Canola | cytosol | 58.71 | 62.0 |
| Bra010404.1-P | Field mustard | cytosol | 58.71 | 62.0 |
| CDX97384 | Canola | cytosol | 58.71 | 62.0 |
| Bra019002.1-P | Field mustard | cytosol | 58.33 | 60.87 |
| Solyc12g013700.1.1 | Tomato | cytosol | 58.33 | 60.63 |
| CDY53810 | Canola | cytosol | 57.95 | 60.47 |
| VIT_00s0586g00030.t01 | Wine grape | cytosol | 58.33 | 60.16 |
| CDX97669 | Canola | cytosol | 57.58 | 60.08 |
| CDY26025 | Canola | cytosol | 57.58 | 60.08 |
| Bra027243.1-P | Field mustard | cytosol | 57.58 | 60.08 |
| AT3G15450.1 | Thale cress | cytosol | 57.2 | 59.68 |
| CDY56826 | Canola | cytosol | 56.82 | 59.29 |
| CDY21841 | Canola | plastid | 45.08 | 59.2 |
| CDY20112 | Canola | cytosol | 56.44 | 58.89 |
| Bra021110.1-P | Field mustard | cytosol | 56.44 | 58.89 |
| VIT_00s0561g00020.t01 | Wine grape | cytosol | 58.33 | 57.89 |
| KRH10843 | Soybean | nucleus | 54.17 | 56.97 |
| CDY61102 | Canola | cytosol | 17.8 | 56.63 |
| KRH10823 | Soybean | cytosol | 53.79 | 56.57 |
| KRH21498 | Soybean | cytosol | 53.03 | 55.78 |
| CDY21375 | Canola | cytosol | 15.91 | 54.55 |
| PGSC0003DMT400033379 | Potato | cytosol | 51.89 | 54.15 |
| PGSC0003DMT400057793 | Potato | cytosol | 51.89 | 53.73 |
| Solyc03g006490.2.1 | Tomato | cytosol | 51.14 | 53.36 |
| Solyc02g078500.2.1 | Tomato | unclear | 51.52 | 53.33 |
| KRH20474 | Soybean | nucleus | 51.52 | 52.92 |
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 17.8 | 52.22 |
| CDY07847 | Canola | cytosol | 16.67 | 51.76 |
| KRH33539 | Soybean | cytosol | 29.92 | 49.07 |
| Bra037807.1-P | Field mustard | cytosol | 18.18 | 48.0 |
| KRH63496 | Soybean | cytosol | 34.47 | 47.4 |
| KRG89645 | Soybean | cytosol | 31.82 | 43.3 |
| KRH50016 | Soybean | cytosol, nucleus, plastid | 50.76 | 42.68 |
Protein Annotations
| EnsemblPlants:TraesCSU01G021600.1 | EnsemblPlantsGene:TraesCSU01G021600 | Gene3D:3.60.20.10 | InterPro:DUF3700 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N |
| PANTHER:PTHR11772 | PANTHER:PTHR11772:SF14 | PFAM:PF12481 | SEG:seg | SMART:SM01172 | SUPFAM:SSF56235 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:23524464..23525355
Molecular Weight (calculated)
28016.2 Da
IEP (calculated)
7.434
GRAVY (calculated)
-0.095
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIFQKQVA HAPQELNSPR GSTAKPRNPD EILRDFHAAH PADAFSTSFG GGAALACVAA QPRSLAAGGY QRMFCGLDDI YCVFMGTLDN LSSLMRQYGL
101: TGRSTNEALL VIEAYRTLRD RGPYPADQVV KDLSGSFAFV VFDNRGRSGS GAAVFAAQST DGGVPLHWGV AADGSVVICD DRGVAKAGCG RSYAPFPPGC
201: MFHSEGGLKS FEHPMNRLKA LPRVDSEGVM CGANFKVDAF TKINSMPRVG SATNWAAAWD DAAI
101: TGRSTNEALL VIEAYRTLRD RGPYPADQVV KDLSGSFAFV VFDNRGRSGS GAAVFAAQST DGGVPLHWGV AADGSVVICD DRGVAKAGCG RSYAPFPPGC
201: MFHSEGGLKS FEHPMNRLKA LPRVDSEGVM CGANFKVDAF TKINSMPRVG SATNWAAAWD DAAI
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.