Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27450.1 | CDY32931 | AT5G43830.1 | 21798944 |
| AT4G27450.1 | CDY50809 | AT5G43830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89248 | Canola | cytosol | 99.2 | 99.2 |
| CDX97384 | Canola | cytosol | 96.8 | 96.8 |
| CDY14279 | Canola | cytosol | 96.4 | 96.4 |
| AT4G27450.1 | Thale cress | cytosol | 95.6 | 95.6 |
| KRH27213 | Soybean | endoplasmic reticulum | 84.8 | 83.46 |
| KRH22129 | Soybean | nucleus | 84.4 | 83.07 |
| VIT_19s0014g03130.t01 | Wine grape | cytosol | 82.8 | 81.18 |
| KRH26075 | Soybean | endoplasmic reticulum | 80.0 | 78.74 |
| Solyc12g013700.1.1 | Tomato | cytosol | 76.0 | 74.8 |
| CDY26025 | Canola | cytosol | 74.0 | 73.12 |
| CDY53810 | Canola | cytosol | 73.2 | 72.33 |
| CDX97669 | Canola | cytosol | 73.2 | 72.33 |
| CDY56826 | Canola | cytosol | 72.4 | 71.54 |
| CDY20112 | Canola | cytosol | 71.2 | 70.36 |
| CDY21841 | Canola | plastid | 54.0 | 67.16 |
| Os04t0679400-01 | Rice | cytosol | 64.4 | 62.4 |
| CDY61102 | Canola | cytosol | 20.4 | 61.45 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 64.0 | 60.38 |
| Zm00001d026632_P001 | Maize | extracellular | 64.0 | 60.38 |
| GSMUA_Achr10P... | Banana | cytosol | 64.0 | 60.15 |
| CDX71441 | Canola | cytosol, mitochondrion, plastid, vacuole | 21.6 | 60.0 |
| TraesCS2A01G586500.1 | Wheat | cytosol | 63.2 | 59.85 |
| TraesCS2D01G600100.1 | Wheat | cytosol | 63.2 | 59.85 |
| TraesCSU01G021600.1 | Wheat | cytosol | 62.8 | 59.47 |
| EES13111 | Sorghum | cytosol, plastid | 62.4 | 59.32 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.4 | 58.26 |
| CDY21375 | Canola | cytosol | 17.6 | 57.14 |
| CDY07847 | Canola | cytosol | 19.2 | 56.47 |
| CDY50809 | Canola | peroxisome | 47.6 | 47.41 |
| CDY32931 | Canola | cytosol | 47.6 | 47.41 |
| CDY61079 | Canola | cytosol | 46.4 | 46.59 |
| CDX92962 | Canola | cytosol | 46.0 | 46.18 |
| CDY59022 | Canola | cytosol | 42.0 | 44.87 |
| CDY47200 | Canola | cytosol | 42.0 | 44.87 |
| CDY02581 | Canola | cytosol | 42.0 | 44.87 |
| CDX88900 | Canola | cytosol | 41.6 | 44.44 |
| CDY13981 | Canola | cytosol | 41.6 | 44.07 |
| CDX92551 | Canola | cytosol | 41.6 | 44.07 |
| CDY59012 | Canola | cytosol | 42.0 | 41.5 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 40.0 | 40.82 |
| CDX87121 | Canola | cytosol | 26.4 | 29.73 |
| CDY32292 | Canola | plasma membrane | 22.0 | 24.89 |
| CDX80239 | Canola | vacuole | 22.4 | 24.14 |
| HORVU2Hr1G118570.2 | Barley | cytosol | 24.4 | 22.51 |
| CDX76924 | Canola | mitochondrion | 13.6 | 17.09 |
Protein Annotations
| EnsemblPlants:CDY29312 | EnsemblPlantsGene:GSBRNA2T00042281001 | Gene3D:3.60.20.10 | InterPro:DUF3700 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N |
| PANTHER:PTHR11772 | PANTHER:PTHR11772:SF15 | PFAM:PF12481 | ProteinID:CDY29312 | ProteinID:CDY29312.1 | SMART:SM01172 |
| SUPFAM:SSF56235 | UniParc:UPI0002C8A3CD | UniProt:A0A078GW05 | MapMan:35.1 | : | : |
Description
BnaC01g19640DBnaC01g19640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW05]
Coordinates
chrLK032234:-:477802..479717
Molecular Weight (calculated)
27567.7 Da
IEP (calculated)
5.947
GRAVY (calculated)
-0.107
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIFHEAFA HPPEELYSPA SEKCSKQPKL PEETLNDFLS RHSDNTFSMS FGKAAVLAYV RPSASFSVHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFAFVVY DSKAGSVFTA LGSDGGVKLF WGIAADGSVV ISDDLEVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYTRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFAFVVY DSKAGSVFTA LGSDGGVKLF WGIAADGSVV ISDDLEVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYTRVNSIP RRGSEANWSL
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.