Factsheet for GSMUA_Achr10P06840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P14100_001
GSMUA_Achr2P08220_001
GSMUA_Achr2P08920_001
GSMUA_Achr3P30980_001
GSMUA_Achr4P07750_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15450.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT3G15450.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT3G15450.1	GSMUA_Achr1P14100_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr2P08920_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr3P30980_001	AT5G43830.1	21798944
AT3G15450.1	GSMUA_Achr4P07750_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr1P14100_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr2P08920_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr3P30980_001	AT5G43830.1	21798944
AT4G27450.1	GSMUA_Achr4P07750_001	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	74.81	82.23
GSMUA_Achr3P14300_001	Banana	cytosol	77.07	77.36
Os04t0679400-01	Rice	cytosol	70.3	72.48
TraesCSU01G021600.1	Wheat	cytosol	68.42	68.94
TraesCS2A01G586500.1	Wheat	cytosol	68.42	68.94
Zm00001d026632_P001	Maize	extracellular	68.42	68.68
EES13111	Sorghum	cytosol, plastid	67.67	68.44
TraesCS2D01G600100.1	Wheat	cytosol	67.67	68.18
VIT_19s0014g03130.t01	Wine grape	cytosol	62.41	65.1
CDY29312	Canola	cytosol	60.15	64.0
KRH27213	Soybean	endoplasmic reticulum	60.9	63.78
KRH22129	Soybean	nucleus	60.9	63.78
CDX97384	Canola	cytosol	59.77	63.6
CDY14279	Canola	cytosol	59.77	63.6
CDX89248	Canola	cytosol	59.77	63.6
Bra026348.1-P	Field mustard	cytosol	59.77	63.6
Bra010404.1-P	Field mustard	cytosol	59.77	63.6
AT4G27450.1	Thale cress	cytosol	59.02	62.8
KRH26075	Soybean	endoplasmic reticulum	59.02	61.81
Solyc12g013700.1.1	Tomato	cytosol	58.27	61.02
CDY53810	Canola	cytosol	57.89	60.87
Bra019002.1-P	Field mustard	cytosol	57.52	60.47
Bra021110.1-P	Field mustard	cytosol	57.52	60.47
AT3G15450.1	Thale cress	cytosol	57.14	60.08
CDY26025	Canola	cytosol	57.14	60.08
CDY20112	Canola	cytosol	57.14	60.08
CDY56826	Canola	cytosol	57.14	60.08
VIT_00s0586g00030.t01	Wine grape	cytosol	57.52	59.77
CDX97669	Canola	cytosol	56.77	59.68
Bra027243.1-P	Field mustard	cytosol	56.77	59.68
KRH10823	Soybean	cytosol	55.26	58.57
CDY21841	Canola	plastid	43.98	58.21
KRH10843	Soybean	nucleus	54.51	57.77
KRH21498	Soybean	cytosol	54.51	57.77
VIT_00s0561g00020.t01	Wine grape	cytosol	57.52	57.52
PGSC0003DMT400033379	Potato	cytosol	53.38	56.13
KRH20474	Soybean	nucleus	54.14	56.03
Solyc03g006490.2.1	Tomato	cytosol	52.26	54.94
PGSC0003DMT400057793	Potato	cytosol	52.63	54.9
Solyc02g078500.2.1	Tomato	unclear	51.88	54.12
CDY61102	Canola	cytosol	16.17	51.81
CDY21375	Canola	cytosol	14.66	50.65
HORVU2Hr1G118550.2	Barley	cytosol	45.86	49.8
CDY07847	Canola	cytosol	15.79	49.41
KRH33539	Soybean	cytosol	29.32	48.45
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	16.17	47.78
KRH63496	Soybean	cytosol	34.21	47.4
Bra037807.1-P	Field mustard	cytosol	17.67	47.0
GSMUA_Achr3P30980_001	Banana	plastid	42.86	46.15
GSMUA_Achr1P14100_001	Banana	cytosol	42.86	45.97
KRH50016	Soybean	cytosol, nucleus, plastid	54.14	45.86
GSMUA_Achr4P07750_001	Banana	cytosol	42.11	45.34
GSMUA_Achr2P08920_001	Banana	cytosol	42.11	45.34
KRG89645	Soybean	cytosol	31.2	42.78
GSMUA_Achr8P00370_001	Banana	cytosol	36.09	40.68
GSMUA_Achr8P08600_001	Banana	cytosol	36.09	40.68
GSMUA_Achr11P...	Banana	cytosol	32.33	37.23
GSMUA_Achr10P...	Banana	cytosol	35.71	36.97
HORVU2Hr1G118570.2	Barley	cytosol	25.56	25.09

Protein Annotations

EnsemblPlants:GSMUA_Achr10P06840_001	EnsemblPlants:GSMUA_Achr10T06840_001	EnsemblPlantsGene:GSMUA_Achr10G06840_001	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF14	PFAM:PF12481	SMART:SM01172	SUPFAM:SSF56235
UniParc:UPI00029572FD	UniProt:M0RG11	MapMan:35.1	:	:	:

Description

Putative Stem-specific protein TSJT1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06840_001]

Coordinates

chr10:+:17140356..17141681

Molecular Weight (calculated)

28828.3 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.154

Length

266 amino acids

Sequence
(BLAST)

001: MLAIFHKTVA HPPQELGCSE STSTVPPMPG YSRRQPKNPD EILRDFHSAH PAHAFCATFS GGAALACLGP RAPPPSLLHR RWFCSFDEVY CMFVGSLDNL
101: SSLVRQYGLC GKSTNEALLV IEAYRTLRDR GPYPADQVVK DLGGSFAFVV YDNKNGAVFA ALSSDGGVPL HWGIAADGSV VICDDREIMK GSCGKSYAPF
201: PAGCMFHSEG GLRSFEHPTK KMQAMPRVDS EGMMCGASFK VDAFSKIATM PRVGSAANWT SWDDSY

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.