Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027506.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27450.1 | Bra027506.1-P | AT5G43830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14279 | Canola | cytosol | 100.0 | 100.0 |
| Bra026348.1-P | Field mustard | cytosol | 96.4 | 96.4 |
| AT4G27450.1 | Thale cress | cytosol | 96.0 | 96.0 |
| KRH27213 | Soybean | endoplasmic reticulum | 83.2 | 81.89 |
| KRH22129 | Soybean | nucleus | 82.8 | 81.5 |
| VIT_19s0014g03130.t01 | Wine grape | cytosol | 82.8 | 81.18 |
| KRH26075 | Soybean | endoplasmic reticulum | 79.6 | 78.35 |
| Solyc12g013700.1.1 | Tomato | cytosol | 76.4 | 75.2 |
| Bra019002.1-P | Field mustard | cytosol | 73.6 | 72.73 |
| Bra027243.1-P | Field mustard | cytosol | 72.0 | 71.15 |
| Bra021110.1-P | Field mustard | cytosol | 70.0 | 69.17 |
| Os04t0679400-01 | Rice | cytosol | 63.2 | 61.24 |
| Zm00001d026632_P001 | Maize | extracellular | 63.6 | 60.0 |
| GSMUA_Achr10P... | Banana | cytosol | 63.6 | 59.77 |
| GSMUA_Achr3P14300_001 | Banana | cytosol | 62.8 | 59.25 |
| TraesCS2A01G586500.1 | Wheat | cytosol | 62.4 | 59.09 |
| TraesCS2D01G600100.1 | Wheat | cytosol | 62.4 | 59.09 |
| EES13111 | Sorghum | cytosol, plastid | 62.0 | 58.94 |
| TraesCSU01G021600.1 | Wheat | cytosol | 62.0 | 58.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 55.6 | 57.44 |
| Bra023707.1-P | Field mustard | cytosol | 34.8 | 51.79 |
| Bra037807.1-P | Field mustard | cytosol | 20.4 | 51.0 |
| Bra027506.1-P | Field mustard | cytosol | 47.2 | 47.01 |
| Bra001889.1-P | Field mustard | cytosol | 46.0 | 46.18 |
| Bra002216.1-P | Field mustard | cytosol | 40.8 | 43.22 |
| HORVU2Hr1G118550.2 | Barley | cytosol | 39.6 | 40.41 |
| HORVU2Hr1G118570.2 | Barley | cytosol | 24.0 | 22.14 |
Protein Annotations
| EnsemblPlants:Bra010404.1 | EnsemblPlants:Bra010404.1-P | EnsemblPlantsGene:Bra010404 | Gene3D:3.60.20.10 | InterPro:DUF3700 | InterPro:IPR029055 |
| InterPro:Ntn_hydrolases_N | PANTHER:PTHR11772 | PANTHER:PTHR11772:SF15 | PFAM:PF12481 | SMART:SM01172 | SUPFAM:SSF56235 |
| UniParc:UPI0002545695 | UniProt:M4D1Q4 | MapMan:35.1 | : | : | : |
Description
AT4G27450 (E=6e-142) | unknown protein
Coordinates
chrA08:+:14357308..14358398
Molecular Weight (calculated)
27491.7 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.069
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAIFHEAFA HPPEELHSPA SEKCSKQPKL PEETLNSFLS RYPLNTFSMS FGKAAVLAYV RPSASFSVHQ RVFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFAFVVY DSKAGSVFTA LGSDGGVKLF WGIAADGSVV ISDDLDVIKD GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYSRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFAFVVY DSKAGSVFTA LGSDGGVKLF WGIAADGSVV ISDDLDVIKD GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYSRVNSIP RRGSEANWSL
001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL
Arabidopsis Description
AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.