CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91376
KRH35440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27450.1	KRG91376	AT5G43830.1	21798944
AT4G27450.1	KRH35440	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27213	Soybean	endoplasmic reticulum	85.43	85.43
KRH22129	Soybean	nucleus	85.04	85.04
Bra026348.1-P	Field mustard	cytosol	79.13	80.4
CDX89248	Canola	cytosol	79.13	80.4
CDX97384	Canola	cytosol	78.74	80.0
CDY29312	Canola	cytosol	78.74	80.0
AT4G27450.1	Thale cress	cytosol	78.74	80.0
Bra010404.1-P	Field mustard	cytosol	78.35	79.6
CDY14279	Canola	cytosol	78.35	79.6
VIT_19s0014g03130.t01	Wine grape	cytosol	77.17	76.86
Solyc12g013700.1.1	Tomato	cytosol	69.69	69.69
KRH10843	Soybean	nucleus	62.2	62.95
KRH21498	Soybean	cytosol	61.81	62.55
KRH10823	Soybean	cytosol	61.42	62.15
Os04t0679400-01	Rice	cytosol	62.6	61.63
EES13111	Sorghum	cytosol, plastid	62.99	60.84
Zm00001d026632_P001	Maize	extracellular	63.39	60.75
KRH20474	Soybean	nucleus	61.42	60.7
TraesCSU01G021600.1	Wheat	cytosol	62.2	59.85
TraesCS2A01G586500.1	Wheat	cytosol	62.2	59.85
GSMUA_Achr3P14300_001	Banana	cytosol	62.2	59.62
TraesCS2D01G600100.1	Wheat	cytosol	61.81	59.47
GSMUA_Achr10P...	Banana	cytosol	61.81	59.02
GSMUA_AchrUn_...	Banana	cytosol	54.33	57.02
KRH33539	Soybean	cytosol	35.04	55.28
KRH63496	Soybean	cytosol	41.34	54.69
KRH21458	Soybean	cytosol	25.59	50.39
KRH50016	Soybean	cytosol, nucleus, plastid	62.2	50.32
KRG89645	Soybean	cytosol	38.19	50.0
KRH35440	Soybean	cytosol, nucleus	44.88	45.6
KRG91376	Soybean	cytosol, nucleus	44.09	44.8
KRH20897	Soybean	nucleus	40.94	44.07
KRH10856	Soybean	cytosol	42.91	42.91
KRH02111	Soybean	cytosol	39.37	42.37
KRH51038	Soybean	plastid	38.19	41.28
HORVU2Hr1G118550.2	Barley	cytosol	38.58	40.0
KRH38367	Soybean	extracellular	18.5	38.84
KRH11390	Soybean	nucleus	40.94	35.49
HORVU2Hr1G118570.2	Barley	cytosol	24.41	22.88

Protein Annotations

EMBL:ACUP02007452	EnsemblPlants:KRH26075	EnsemblPlantsGene:GLYMA_12G150500	EntrezGene:100814871	Gene3D:3.60.20.10	InterPro:DUF3700
InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF15	PFAM:PF12481	ProteinID:KRH26075
ProteinID:KRH26075.1	SMART:SM01172	SUPFAM:SSF56235	UniParc:UPI000233CEA5	UniProt:I1LT24	MapMan:35.1

Description

hypothetical protein

Coordinates

chr12:-:21612166..21614478

Molecular Weight (calculated)

27974.3 Da

IEP (calculated)

6.669

GRAVY (calculated)

-0.219

Length

254 amino acids

Sequence
(BLAST)

001: MLSIFHKGFA HPPEELKSPA SNSGSNKPKI PEETLREFLS HHPHNTFSLS FGHSAVLAYT RPDPPSFVHQ RLFCGIDDIY CIFLGSLNNL CSLNKQYGLA
101: KGTNEAMFVI EAYKTLRDRG PYPADQVVKD LDGSFGFVVY DSKVGSVFAA LGSDGGIKLY WGIAADESVV ISDDLDVMKE GCAKSFAPFP PGCMFHSEGG
201: LMSFEHPMNK LKAMPRIDSE GAICGANFKV DKYARVNSIP RVGSQANWME WTQH

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.