CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39040
KRH41871
KRH48661
KRH60559

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19140.1	KRH39040	AT3G17840.1	15618630
AT5G19140.1	KRH41871	AT3G17840.1	15618630
AT5G19140.1	KRH48661	AT3G17840.1	15618630
AT5G19140.1	KRH60559	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51038	Soybean	plastid	84.75	85.11
KRH02111	Soybean	cytosol	84.75	84.75
Bra023707.1-P	Field mustard	cytosol	59.32	83.33
PGSC0003DMT400023208	Potato	plastid	82.63	82.63
CDY02581	Canola	cytosol	81.78	82.48
Solyc01g079880.2.1	Tomato	plastid	82.2	82.2
AT5G19140.1	Thale cress	plastid	81.36	82.05
CDY47200	Canola	cytosol	81.36	82.05
CDX92551	Canola	cytosol	81.36	81.36
CDY13981	Canola	cytosol	81.36	81.36
CDX88900	Canola	cytosol	80.51	81.2
Bra002216.1-P	Field mustard	cytosol	80.93	80.93
CDY59022	Canola	cytosol	80.08	80.77
KRH11390	Soybean	nucleus	97.88	78.84
CDY59012	Canola	cytosol	80.51	75.1
Solyc06g054370.1.1	Tomato	cytosol, plastid	64.83	75.0
VIT_05s0020g02770.t01	Wine grape	cytosol, plastid	81.36	70.85
GSMUA_Achr8P00370_001	Banana	cytosol	69.92	69.92
GSMUA_Achr8P08600_001	Banana	cytosol	69.49	69.49
Os11t0147800-01	Rice	cytosol	69.07	68.78
TraesCS5A01G134000.1	Wheat	golgi	68.64	68.64
Os12t0145100-01	Rice	cytosol, plastid	69.07	68.49
HORVU5Hr1G040970.1	Barley	cytosol	68.22	68.22
TraesCS5D01G139300.1	Wheat	golgi, unclear	68.22	68.22
TraesCS5B01G131500.1	Wheat	golgi	67.8	67.8
Zm00001d023376_P002	Maize	extracellular	66.95	66.39
EES09256	Sorghum	cytosol	66.53	65.97
KXG22952	Sorghum	cytosol, plastid	66.1	63.67
KRH38367	Soybean	extracellular	29.66	57.85
KRH21458	Soybean	cytosol	28.81	52.71
GSMUA_Achr11P...	Banana	cytosol	51.27	52.38
Zm00001d052493_P001	Maize	plastid	64.83	42.27
KRH26075	Soybean	endoplasmic reticulum	44.07	40.94
KRH22129	Soybean	nucleus	44.07	40.94
KRH35440	Soybean	cytosol, nucleus	43.22	40.8
KRH27213	Soybean	endoplasmic reticulum	43.64	40.55
KRG91376	Soybean	cytosol, nucleus	42.8	40.4
KRH63496	Soybean	cytosol	31.36	38.54
KRH21498	Soybean	cytosol	40.68	38.25
KRH33539	Soybean	cytosol	25.85	37.89
KRH10823	Soybean	cytosol	40.25	37.85
KRH10843	Soybean	nucleus	39.83	37.45
KRH20474	Soybean	nucleus	39.41	36.19
KRH10856	Soybean	cytosol	38.56	35.83
CDY32292	Canola	plasma membrane	32.63	34.84
KRG89645	Soybean	cytosol	27.97	34.02
CDX80239	Canola	vacuole	32.63	33.19
KRH50016	Soybean	cytosol, nucleus, plastid	39.83	29.94

Protein Annotations

EMBL:ACUP02008324	EnsemblPlants:KRH20897	EnsemblPlantsGene:GLYMA_13G207800	Gene3D:3.60.20.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF3700	InterPro:IPR029055	InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF18
PFAM:PF12481	ProteinID:KRH20897	ProteinID:KRH20897.1	SEG:seg	SMART:SM01172	SUPFAM:SSF56235
UniParc:UPI000233BF15	UniProt:I1M136	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:32131885..32138180

Molecular Weight (calculated)

25406.1 Da

IEP (calculated)

6.019

GRAVY (calculated)

0.000

Length

236 amino acids

Sequence
(BLAST)

001: MLGIFSSSVV SPPEELVAAG SRTPSPKTTA GKLLNRFVEN KASAVSLQVG EHVQLAYTHH NESPWHPRSF AVKDEIFCLF EGALDNLGSL RQQYGLAKSA
101: NEVVLVIEAY KALRDRAPYP ANRVVCHLSG SFAFIVFDKS TSTLFVASDQ AGKVPLYWGI TADGYVAFAD DADLLKGSCG KSLASFPQGC FYSTAVGGLR
201: CYENPKNKIT AIPAEEEEIW GAFFKVEGSA VLAGTE

Best Arabidopsis Sequence Match ( AT5G19140.1 )
(BLAST)

001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD

Arabidopsis Description

ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.