Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0223000-02 | |
| Os03t0712400-02 | |
| Os04t0463000-01 | |
| Os08t0427600-00 | |
| Os09t0400500-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0147800-01 | Rice | cytosol | 90.34 | 90.72 |
| TraesCS5A01G134000.1 | Wheat | golgi | 87.82 | 88.56 |
| TraesCS5D01G139300.1 | Wheat | golgi, unclear | 87.39 | 88.14 |
| Zm00001d023376_P002 | Maize | extracellular | 86.97 | 86.97 |
| TraesCS5B01G131500.1 | Wheat | golgi | 86.13 | 86.86 |
| EES09256 | Sorghum | cytosol | 86.55 | 86.55 |
| HORVU5Hr1G040970.1 | Barley | cytosol | 85.71 | 86.44 |
| KXG22952 | Sorghum | cytosol, plastid | 86.55 | 84.08 |
| GSMUA_Achr8P08600_001 | Banana | cytosol | 77.73 | 78.39 |
| GSMUA_Achr8P00370_001 | Banana | cytosol | 75.63 | 76.27 |
| Bra023707.1-P | Field mustard | cytosol | 52.1 | 73.81 |
| AT5G19140.1 | Thale cress | plastid | 70.59 | 71.79 |
| CDY47200 | Canola | cytosol | 70.17 | 71.37 |
| CDY02581 | Canola | cytosol | 70.17 | 71.37 |
| CDY13981 | Canola | cytosol | 70.17 | 70.76 |
| CDX92551 | Canola | cytosol | 70.17 | 70.76 |
| Bra002216.1-P | Field mustard | cytosol | 69.75 | 70.34 |
| CDY59022 | Canola | cytosol | 68.91 | 70.09 |
| CDX88900 | Canola | cytosol | 68.91 | 70.09 |
| KRH20897 | Soybean | nucleus | 68.49 | 69.07 |
| KRH51038 | Soybean | plastid | 67.23 | 68.09 |
| KRH02111 | Soybean | cytosol | 67.23 | 67.8 |
| PGSC0003DMT400023208 | Potato | plastid | 65.97 | 66.53 |
| Solyc01g079880.2.1 | Tomato | plastid | 65.97 | 66.53 |
| CDY59012 | Canola | cytosol | 68.49 | 64.43 |
| Solyc06g054370.1.1 | Tomato | cytosol, plastid | 52.94 | 61.76 |
| GSMUA_Achr11P... | Banana | cytosol | 55.88 | 57.58 |
| KRH11390 | Soybean | nucleus | 69.75 | 56.66 |
| VIT_05s0020g02770.t01 | Wine grape | cytosol, plastid | 63.03 | 55.35 |
| Zm00001d052493_P001 | Maize | plastid | 81.51 | 53.59 |
| KRH38367 | Soybean | extracellular | 25.21 | 49.59 |
| Os03t0744600-01 | Rice | plasma membrane | 42.86 | 40.64 |
| Os04t0679400-01 | Rice | cytosol | 43.28 | 39.92 |
| CDY32292 | Canola | plasma membrane | 30.25 | 32.58 |
| CDX80239 | Canola | vacuole | 30.67 | 31.47 |
Protein Annotations
| Gene3D:3.60.20.10 | MapMan:35.1 | EntrezGene:4351488 | ProteinID:ABA96468.1 | EMBL:AK067141 | EMBL:AK104102 |
| EMBL:AK104347 | ProteinID:BAF29162.1 | ProteinID:BAT15873.1 | InterPro:DUF3700 | ProteinID:EAZ19628.1 | EMBL:EU267972 |
| InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | EnsemblPlantsGene:Os12g0145100 | EnsemblPlants:Os12t0145100-01 | PFAM:PF12481 | PANTHER:PTHR11772 |
| PANTHER:PTHR11772:SF18 | UniProt:Q2QXS4 | SMART:SM01172 | SUPFAM:SSF56235 | UniParc:UPI0000681A59 | RefSeq:XP_015620578.1 |
Description
Similar to Wali7 protein (Fragment). (Os12t0145100-01)
Coordinates
chr12:-:2215943..2219491
Molecular Weight (calculated)
25199.1 Da
IEP (calculated)
5.674
GRAVY (calculated)
0.106
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGVFSGDVV EVPAELVAAG SRTPSPKTRA SELVSRFLGG AEPAVSVQLG DLGHLAYSHA NQALLRPRSF AAKDDIFCLF EGVLDNLGNL NQQYGLSKGA
101: NEVLLVIEAY KTLRDRAPYP ASFMLSQLAG SYAFVLFDKS TSTLLVASDP EGKVSLYWGI TADGSVAFSD NIDLLKGSCG KSLAPFPQGC FYSNALGVGG
201: LKCYENPKHK VTAVPAKEEE ICGATFKVEG STILTALH
101: NEVLLVIEAY KTLRDRAPYP ASFMLSQLAG SYAFVLFDKS TSTLLVASDP EGKVSLYWGI TADGSVAFSD NIDLLKGSCG KSLAPFPQGC FYSNALGVGG
201: LKCYENPKHK VTAVPAKEEE ICGATFKVEG STILTALH
001: MLGIFSGAIV SPPEELVAAG SRTPSPKTTG STLVNRFVEK NPSAVSVQVG DYVQLAYSHH NESPLRPRSF GAKDEIFCLF QGSLDNLGSL KQQYGLAKNA
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD
101: NEVLLVIEAY KTLRDRAPYP ANHVVAHLSG DFAFVVFDKS TSTLFVASDQ VGKVPLYWGI TADGYVAFAD DVDLLKGACG KSLASFPQGC YYSTALGGLR
201: SFENPKNKIT AVPANEGEIW GATFKVEGAT VLAD
Arabidopsis Description
ATAILP1Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q94BR2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.