Factsheet for PGSC0003DMT400057793

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400077577

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15450.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT3G15450.1	PGSC0003DMT400077577	AT5G43830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078500.2.1	Tomato	unclear	96.86	96.86
PGSC0003DMT400033379	Potato	cytosol	81.57	82.21
VIT_00s0586g00030.t01	Wine grape	cytosol	65.49	65.23
KRH10823	Soybean	cytosol	62.75	63.74
KRH21498	Soybean	cytosol	62.35	63.35
VIT_00s0561g00020.t01	Wine grape	cytosol	65.49	62.78
KRH10843	Soybean	nucleus	61.57	62.55
Bra027243.1-P	Field mustard	cytosol	60.39	60.87
AT3G15450.1	Thale cress	cytosol	60.39	60.87
CDX97669	Canola	cytosol	60.39	60.87
KRH20474	Soybean	nucleus	60.78	60.31
CDY53810	Canola	cytosol	59.61	60.08
CDY56826	Canola	cytosol	59.61	60.08
Bra019002.1-P	Field mustard	cytosol	59.22	59.68
Bra021110.1-P	Field mustard	cytosol	58.82	59.29
CDY26025	Canola	cytosol	58.43	58.89
CDY20112	Canola	cytosol	58.43	58.89
KRH33539	Soybean	cytosol	36.08	57.14
CDY21841	Canola	plastid	44.31	56.22
Zm00001d026632_P001	Maize	extracellular	58.04	55.85
Os04t0679400-01	Rice	cytosol	56.08	55.43
EES13111	Sorghum	cytosol, plastid	56.47	54.75
CDY21375	Canola	cytosol	16.47	54.55
CDY61102	Canola	cytosol	17.65	54.22
KRH63496	Soybean	cytosol	40.78	54.17
GSMUA_Achr10P...	Banana	cytosol	54.9	52.63
TraesCSU01G021600.1	Wheat	cytosol	53.73	51.89
TraesCS2D01G600100.1	Wheat	cytosol	53.73	51.89
TraesCS2A01G586500.1	Wheat	cytosol	53.33	51.52
GSMUA_Achr3P14300_001	Banana	cytosol	53.33	51.32
CDX71441	Canola	cytosol, mitochondrion, plastid, vacuole	18.04	51.11
CDY07847	Canola	cytosol	16.86	50.59
GSMUA_AchrUn_...	Banana	cytosol	47.45	50.0
KRH50016	Soybean	cytosol, nucleus, plastid	60.39	49.04
KRG89645	Soybean	cytosol	37.25	48.97
Bra037807.1-P	Field mustard	cytosol	18.82	48.0
PGSC0003DMT400077577	Potato	cytosol	43.53	44.22
PGSC0003DMT400057654	Potato	cytosol	38.82	39.92
PGSC0003DMT400023208	Potato	plastid	36.86	39.83
HORVU2Hr1G118550.2	Barley	cytosol	30.59	31.84
HORVU2Hr1G118570.2	Barley	cytosol	23.92	22.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400057793	EnsemblPlantsGene:PGSC0003DMG400022437	EntrezGene:102599804	InterPro:DUF3700	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PANTHER:PTHR11772	PANTHER:PTHR11772:SF15	PFAM:PF12481	PGSC:PGSC0003DMG400022437	RefSeq:XP_006347064.1	SMART:SM01172
SUPFAM:SSF56235	UniParc:UPI0002958707	UniProt:M1C1P1	MapMan:35.1	:	:

Description

Stem-specific protein TSJT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022437]

Coordinates

chr2:+:34171724..34174108

Molecular Weight (calculated)

27698.0 Da

IEP (calculated)

8.354

GRAVY (calculated)

-0.185

Length

255 amino acids

Sequence
(BLAST)

001: MLAIFKKSVV DPPKELQSPA SLQSSNKAVS PEETMKDFLA SNSNNGFSIG FMDKAFLAYS KPPSSSNAQQ RLFCGLNGIY CIFLGSLNNL WALNKQYGLS
101: KGTNEAMLVS EAYRTLRDRG PFPAHEVLKG LEGSFGFVIY DHKAGNVFVA LGADETAKMF WGIASDGSVM ISDSVDHIKG SCLKSFAPFP SGCMYHSESG
201: LKSFEHPSYK MKAMPRVDSE GAMCGACFKV DVYSKVNSMP RVGSSANWAN WGQQA

Best Arabidopsis Sequence Match ( AT4G27450.1 )
(BLAST)

001: MLAIFHEAFA HPPEELNSPA SEKCSKQPKL PEETLNDFLL RYPLNTFSMS FGQAAVLAYV RPSASFSIHQ RLFCGFDDIY CLFFGSLNNL CQLNKQYGLT
101: KTTNEAMFVI EAYRTLRDRG PYPADQVVKD LDGSFSFVVY DSKAGSVFTA LGSDGGVKLY WGIAADGSVV ISDDLDVIKE GCAKSFAPFP TGCMFHSEGG
201: LMSFEHPMNK IKAMPRVDSE GVLCGANFKV DVYNRVNSIP RRGSEANWSL

Arabidopsis Description

AT4g27450/F27G19_50 [Source:UniProtKB/TrEMBL;Acc:Q93V62]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.