Factsheet for PGSC0003DMT400077577

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082780.2.1	Tomato	nucleus	97.21	97.21
VIT_05s0020g04160.t01	Wine grape	cytosol	76.89	77.51
KRH35440	Soybean	cytosol, nucleus	76.89	77.2
KRG91376	Soybean	cytosol, nucleus	76.89	77.2
AT3G22850.1	Thale cress	cytosol	73.71	74.6
CDX92962	Canola	cytosol	72.11	72.69
Bra001889.1-P	Field mustard	cytosol	71.71	72.29
CDY61079	Canola	cytosol	71.71	72.29
GSMUA_Achr1P14100_001	Banana	cytosol	70.92	71.77
GSMUA_Achr2P08920_001	Banana	cytosol	70.12	71.26
AT5G43830.1	Thale cress	peroxisome, plastid	70.92	70.92
GSMUA_Achr3P30980_001	Banana	plastid	69.72	70.85
VIT_14s0036g00050.t01	Wine grape	cytosol, extracellular, peroxisome	62.95	70.54
CDY50809	Canola	peroxisome	69.72	69.72
Bra027506.1-P	Field mustard	cytosol	68.92	68.92
CDY32931	Canola	cytosol	68.92	68.92
TraesCS5A01G438800.1	Wheat	cytosol	65.74	66.8
HORVU5Hr1G105840.4	Barley	cytosol	65.34	66.4
TraesCS5D01G445900.1	Wheat	cytosol	64.94	65.99
HORVU5Hr1G094370.1	Barley	cytosol, peroxisome, plastid	65.74	65.74
Os03t0744600-01	Rice	plasma membrane	65.74	65.74
TraesCS5A01G383200.1	Wheat	golgi, unclear	65.34	65.34
KXG37583	Sorghum	plastid	66.14	64.84
GSMUA_Achr4P07750_001	Banana	cytosol	63.74	64.78
TraesCS5B01G441600.1	Wheat	cytosol	63.74	64.78
TraesCS5B01G387700.1	Wheat	golgi	65.74	64.71
TraesCS5D01G392600.1	Wheat	peroxisome	64.94	64.68
EER93297	Sorghum	cytosol	64.14	64.66
PGSC0003DMT400033379	Potato	cytosol	47.01	46.64
PGSC0003DMT400057654	Potato	cytosol	44.62	45.16
Zm00001d033983_P001	Maize	cytosol	64.94	43.58
PGSC0003DMT400057793	Potato	cytosol	44.22	43.53
PGSC0003DMT400023208	Potato	plastid	39.04	41.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400077577	EnsemblPlantsGene:PGSC0003DMG400030170	EntrezGene:102595083	Gene3D:3.60.20.10	InterPro:DUF3700	InterPro:IPR029055
InterPro:Ntn_hydrolases_N	PANTHER:PTHR11772	PANTHER:PTHR11772:SF8	PFAM:PF12481	PGSC:PGSC0003DMG400030170	RefSeq:XP_006363460.1
SMART:SM01172	SUPFAM:SSF56235	UniParc:UPI000296049A	UniProt:M1CYK7	MapMan:35.1	:

Description

Stem-specific protein TSJT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030170]

Coordinates

chr9:+:54527563..54530999

Molecular Weight (calculated)

27199.9 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.224

Length

251 amino acids

Sequence
(BLAST)

001: MLAVFDKSVA KSPEALQSPN NDGAVSALKD GFLAQHFSSA HSGSVTINLG SSGFLAYSSE RQNPLLPRLF AVVDDIFCMF QGHIENVAHL KQQYGLNKTA
101: NEVIIVIEAY RTLRDRGPYP PDQVVKDIHG KFAFVLYDSA SKSAFLASDV DGSVPFFWGT DSEGHLVLSD DADIVKQGCG KSFAPFPKGC FFTSSGGLRS
201: FEHPRNELKP VPRVDSSGEV CGANFKVDSE SKKVDSGMPR VGSAANWSQH Y

Best Arabidopsis Sequence Match ( AT3G22850.1 )
(BLAST)

001: MLAIFDKNVA KTPEALQGQE GGSVCALKDR FLPNHFSSVY PGAVTINLGS SGFIACSLEK QNPLLPRLFA VVDDMFCIFQ GHIENVPILK QQYGLTKTAT
101: EVTIVIEAYR TLRDRGPYSA EQVVRDFQGK FGFMLYDCST QNVFLAGDVD GSVPLYWGTD AEGHLVVSDD VETVKKGCGK SFAPFPKGCF FTSSGGLRSY
201: EHPSNELKPV PRVDSSGEVC GVTFKVDSEA KKEAMPRVGS VQNWSKQI

Arabidopsis Description

Aluminum induced protein with YGL and LRDR motifs [Source:UniProtKB/TrEMBL;Acc:Q9LIL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.