Factsheet for Solyc12g089340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075420	Potato	cytosol	98.86	98.86
VIT_18s0001g14680.t01	Wine grape	cytosol	86.35	86.46
KRH05971	Soybean	cytosol	82.43	81.7
KRH17452	Soybean	endoplasmic reticulum	81.8	81.18
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	71.81	80.91
EER93269	Sorghum	cytosol	81.67	80.45
CDX87655	Canola	cytosol	80.4	80.3
TraesCS5D01G455000.1	Wheat	cytosol	80.4	80.2
TraesCS5A01G448400.1	Wheat	golgi	80.4	80.2
AT1G75850.1	Thale cress	cytosol	79.27	79.37
Bra015806.1-P	Field mustard	cytosol	80.28	78.69
Solyc02g083560.2.1	Tomato	cytosol	78.0	78.1
CDX73208	Canola	cytosol	70.42	78.01
Solyc03g033400.2.1	Tomato	cytosol, nucleus	77.75	77.85
CDY13527	Canola	mitochondrion	64.73	77.69
Zm00001d013059_P003	Maize	cytosol	80.91	77.67
Os03t0801600-01	Rice	cytosol	81.16	74.56
CDX73207	Canola	cytosol	8.34	72.53
TraesCS5B01G453000.1	Wheat	cytosol	80.28	71.91
CDY13526	Canola	cytosol	10.37	68.33
KRH37553	Soybean	cytosol	9.61	65.52
CDY39067	Canola	endoplasmic reticulum, golgi	22.25	59.86
GSMUA_Achr3P01920_001	Banana	cytosol	4.93	46.99
GSMUA_Achr5P27230_001	Banana	cytosol	5.69	36.0

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005829	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0030904
GO:GO:0030906	GO:GO:0042147	UniProt:K4DH05	PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099
PANTHER:PTHR11099:SF1	EnsemblPlantsGene:Solyc12g089340.1	EnsemblPlants:Solyc12g089340.1.1	UniParc:UPI000276973E	InterPro:Vps35	:

Description

Vacuolar protein sorting-associated protein 35B [Source:Projected from Arabidopsis thaliana (AT1G75850) UniProtKB/Swiss-Prot;Acc:F4I0P8]

Coordinates

chr12:-:64467191..64478978

Molecular Weight (calculated)

89216.9 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.143

Length

791 amino acids

Sequence
(BLAST)

001: MLATEGMEDE EKWLAEGIAA IQHNAFYMSR ALDSDNLREA LKYSALLLSE LRTSKLSPHK YYELYMRAFD ELRKLEMFFR EEDRHGCSVI DLYELVQHAG
101: NILPRLYLLC TVGSVYIKSK EAPAKDILKD LVEMCRGIQH PTRGLFLRSY LAQISRDKLP DLGSEYEGEG DTVMDAVDFV LQNFTEMNKL WVRMQHNEPV
201: RLKEKLDKER SELRDLVGKN LHVLSQIEGV DLEMYKDVVL PRVLEQVVNC KDEIAQYYLM DCIIQVFPDE YHLQTLETLL GACPQLQPAV DVKTVLSRLM
301: ERLSNYADSS PEVLPDFLQV EAFAKLSSAI GKVIEAQVDM PVVGAISLYV SLLTFTLRVH PDRLDYVDQI LGACVKKLSG KSKLEDSKAT KQVVALLSAP
401: LEKYTDIVTV LTLSNYPRVM DHLDAGTNKI MATIIIESIM KNDTCVSTAD KVEVLFELIK GLIKELDGTA TDELDEEDFK EEQNSVARLI HVLYNDEPEE
501: MLKIICTVRK HIMAGGPKRL TFTVPPLSFS ALKLVRRLQG QDGDVAGEEV PATPKKIFKL LNETIEALSS VPSPELALRL YLQCAEAAND CELEPIAYEF
601: FTQAFVLYEE EVADSKAQVT AIHLIIGTLQ KMTVFGVENR DTLTHKATGY SAKLLKKPDQ CRAVYACSHL FWVDDQDGIK DGERVLLCLK RSLRIANAAQ
701: QQANVTRGSS GPVTLFVEIL NKYLYFFEKG NPQITSSAIQ SLIELIKTEM QSDTTTPDKA SDAFFSSTLR YIQFQKQKGG LMGEKYGPIK V

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.