CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87655	Canola	cytosol	95.66	86.24
CDY13526	Canola	cytosol	14.15	84.17
AT1G75850.1	Thale cress	cytosol	92.02	83.16
CDY13527	Canola	mitochondrion	73.39	79.51
VIT_18s0001g14680.t01	Wine grape	cytosol	80.95	73.16
KRH05971	Soybean	cytosol	80.11	71.68
KRH17452	Soybean	endoplasmic reticulum	79.83	71.52
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	78.01	70.42
PGSC0003DMT400075420	Potato	cytosol	77.73	70.16
TraesCS5D01G455000.1	Wheat	cytosol	75.21	67.72
TraesCS5A01G448400.1	Wheat	golgi	75.21	67.72
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	66.53	67.66
EER93269	Sorghum	cytosol	75.77	67.37
KRH37553	Soybean	cytosol	10.64	65.52
Zm00001d013059_P003	Maize	cytosol	75.35	65.29
Os03t0801600-01	Rice	cytosol	75.91	62.95
CDY24377	Canola	cytosol	68.21	61.8
CDY20826	Canola	cytosol	68.07	61.68
TraesCS5B01G453000.1	Wheat	cytosol	75.21	60.82
CDX73731	Canola	cytosol	65.41	59.11
CDX77995	Canola	cytosol	65.13	58.86
CDY59615	Canola	cytosol	64.85	58.09
GSMUA_Achr3P01920_001	Banana	cytosol	5.32	45.78
CDY39067	Canola	endoplasmic reticulum, golgi	14.85	36.05
GSMUA_Achr5P27230_001	Banana	cytosol	5.88	33.6
CDX73207	Canola	cytosol	0.14	1.1

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	GO:A0A078CE38	InterPro:ARM-type_fold	EnsemblPlants:CDX73208	ProteinID:CDX73208
ProteinID:CDX73208.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0030906	GO:GO:0042147	EnsemblPlantsGene:GSBRNA2T00103701001
PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371	UniParc:UPI0004EE8A77
InterPro:Vps35	SEG:seg	:	:	:	:

Description

BnaC06g36560D

Coordinates

chrLK031797:-:2687037..2692765

Molecular Weight (calculated)

80848.2 Da

IEP (calculated)

5.001

GRAVY (calculated)

-0.051

Length

714 amino acids

Sequence
(BLAST)

001: MRRLAGVEDE EKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEVFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYMKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSEYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDELAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMVGG LSVLSVLPST
301: ILPTVDTKIV LTQLMDRLSN YAASSPDVLH EFLQVEAFAK LSNAIGKVIE TQIEMPIIGA MTLFVSLLTF TLRVHPDRLD YVDQILGACV VKLSSVPKLE
401: DARAMKQVVA LLSAPLEKYN DIVTALTLSN YPRVMDHLDD GTNKVMAMLI IQSIMKNNSC ISTADKVEVL FELIKGLIKD LDGTDTEELD EEDFQEEQNS
501: VARLIHMLDN EEPEEMLKII CVVRKHLMTG GTRRLPFTVP PLVFSALRLV RQLDSQGGDI TGEEVSATPR KIFQILNQTI EVLSSVPCPE LALRLYLQCA
601: EAASDCDLEP AAYEFFTQAF ILYEEEIADS KAQVTAIHLI IGTLQRINVF GVENRDTLTH KATGYSARLL KKPDQCRAVY ACSHLFWVDD IDGIKDGERH
701: LLFHYSHTSL SCLH

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.