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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G337000.1
TraesCS2B01G344900.1
TraesCS2D01G325900.1
TraesCS4A01G064200.1
TraesCS4A01G164600.2
TraesCS4A01G267300.1
TraesCS4B01G047100.1
TraesCS4B01G241500.1
TraesCS4D01G046900.1
TraesCS4D01G148600.1
TraesCS4D01G241100.1
TraesCS5A01G205500.1
TraesCS5B01G202900.1
TraesCS5D01G210800.1
TraesCS7A01G214300.1
TraesCS7B01G121600.1
TraesCS7D01G216400.1
TraesCSU01G067300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17790.1 TraesCS4A01G164600.2 AT5G53530.1 17889650
AT2G17790.1 TraesCS4D01G148600.1 AT5G53530.1 17889650
AT2G17790.1 TraesCSU01G067300.1 AT5G53530.1 17889650
AT3G51310.1 TraesCS2A01G337000.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS2B01G344900.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS2D01G325900.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS4A01G064200.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS4A01G267300.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS4B01G047100.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS4B01G241500.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS4D01G046900.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS4D01G241100.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS5A01G205500.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS5B01G202900.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS5D01G210800.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS7A01G214300.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS7B01G121600.1 AT3G17840.1 15618630
AT3G51310.1 TraesCS7D01G216400.1 AT3G17840.1 15618630
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU5Hr1G107250.1 Barley cytosol 100.0 100.0
TraesCS5D01G455000.1 Wheat cytosol 99.87 99.87
EER93269 Sorghum cytosol 95.71 94.52
Zm00001d034492_P006 Maize endoplasmic reticulum, extracellular 82.09 92.73
Zm00001d013059_P003 Maize cytosol 94.58 91.02
TraesCS5B01G453000.1 Wheat cytosol 99.87 89.69
Os03t0801600-01 Rice cytosol 94.7 87.22
GSMUA_Achr9P11120_001 Banana cytosol 86.13 86.57
VIT_18s0001g14680.t01 Wine grape cytosol 82.35 82.66
KRH76626 Soybean endoplasmic reticulum 80.96 80.86
KRH28827 Soybean cytosol, endoplasmic reticulum, nucleus 80.71 80.6
Solyc12g089340.1.1 Tomato cytosol, nucleus, plastid 80.2 80.4
GSMUA_Achr4P17490_001 Banana cytosol 80.2 80.4
PGSC0003DMT400075420 Potato cytosol 79.7 79.9
PGSC0003DMT400058024 Potato cytosol 78.94 79.24
Solyc03g033400.2.1 Tomato cytosol, nucleus 78.81 79.11
KRH05971 Soybean cytosol 79.19 78.7
KRH17452 Soybean endoplasmic reticulum 78.94 78.54
Solyc02g083560.2.1 Tomato cytosol 78.06 78.35
VIT_04s0023g03870.t01 Wine grape cytosol, mitochondrion 82.22 78.18
PGSC0003DMT400009386 Potato cytosol 77.81 78.1
CDX87655 Canola cytosol 76.42 76.52
AT1G75850.1 Thale cress cytosol 75.28 75.57
CDX73208 Canola cytosol 67.72 75.21
Bra015806.1-P Field mustard cytosol 76.29 74.97
CDY13527 Canola mitochondrion 62.3 74.96
CDY24377 Canola cytosol 73.27 73.73
Bra002092.1-P Field mustard cytosol 73.27 73.73
CDY20826 Canola cytosol 73.01 73.48
AT2G17790.1 Thale cress cytosol 72.76 73.32
CDX73731 Canola cytosol 68.98 69.24
CDX77995 Canola cytosol 68.98 69.24
AT3G51310.1 Thale cress cytosol 68.6 68.86
Bra036818.1-P Field mustard cytosol 68.85 68.85
CDY59615 Canola cytosol 68.35 68.0
KRH15953 Soybean cytosol 6.05 67.61
KRH37553 Soybean cytosol 9.21 62.93
CDY13526 Canola cytosol 9.21 60.83
CDX73207 Canola cytosol 6.94 60.44
CDY39067 Canola endoplasmic reticulum, golgi 20.3 54.76
Protein Annotations
EnsemblPlants:TraesCS5A01G448400.1EnsemblPlantsGene:TraesCS5A01G448400Gene3D:1.25.40.660GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0005623GO:GO:0006810GO:GO:0008150GO:GO:0015031GO:GO:0016020GO:GO:0030906
GO:GO:0042147InterPro:ARM-type_foldInterPro:Vps35PANTHER:PTHR11099PANTHER:PTHR11099:SF1PFAM:PF03635
PIRSF:PIRSF009375SEG:segSUPFAM:SSF48371MapMan:22.5.5.3.1::
Description
No Description!
Coordinates
chr5A:+:630920871..630929663
Molecular Weight (calculated)
89865.3 Da
IEP (calculated)
5.013
GRAVY (calculated)
-0.206
Length
793 amino acids
Sequence
(BLAST)
001: MLPDGGGDDE ERWLAEGIAG VQQNAFYMHR ALDSNNLKDA LKYSAQMLSE LRTSRLSPHK YYELYMRAFD EMRKLEMFFR EETRRGSCSV VDLYELVQHA
101: GNVLPRLYLL CTVGSVYIKS KEAPAKDVLK DLVEMCRGIQ HPLRGLFLRS YLSQISRDKL PDIGSEYEGD ADSINDAVEF VLQNFIEMNK LWVRMQHQGP
201: VREKDKRGKE RNELRDLVGK NLHVLSQIEG VDLEMYKENV LPRISEQVVN CKDDLAQFYL MDCIIQVFPD EYHLQTLETL LSAFPQLQPS VDIKTVLSQL
301: MDRLSNYAAT SPEVLPEFLQ VEAFAKFSNA IGKVIEAQVD MPVVGAVTLY VSLLTFTLRV HPDRLDYVDQ VLGACVKKLS GKEKLEDSRA TKQIVALLSA
401: PLEKYSNIVT ALELSNYPRV MDYLDNATTK VMALVIIQSI MKNTTCISTS DKIEALFDLI KGLIKDMDGA QDDELDEEDF KEEQNSVARL IHMLHNDDHD
501: EMLKILCTVQ KHILQGGPKR LPFTVPSLVF SALKLVRRLQ GQDGDVTGEE VPATPKKIFQ ILHQTIEALQ CIPCPELSLR LYLQCAEAAN DCDLEPVAYE
601: FFTQAFILYE EEIADSKAQI TALHLIIGTL QRMNIFGVEN RDTLTHKTTG YSAKLLKKPD QCRAVYACSH LFWTDDQDGI MDGERVLLCL KRALRIANAA
701: QQMANVSKGS SGSVILFIEI LNKYLYFFEK GIPQITNTVI QDLIELIRTE KQNDSSASDP SAEAFFASTL RYIEFQKQKG GSIGEKYEQI KAS
Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)
001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL
Arabidopsis Description
VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.