CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73207	Canola	cytosol	28.57	92.31
CDY13527	Canola	mitochondrion	68.71	30.65
CDX87655	Canola	cytosol	69.05	25.63
AT1G75850.1	Thale cress	cytosol	67.35	25.06
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	55.44	23.22
KRH17452	Soybean	endoplasmic reticulum	60.88	22.46
KRH05971	Soybean	cytosol	60.88	22.43
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	59.86	22.25
PGSC0003DMT400075420	Potato	cytosol	59.86	22.25
VIT_18s0001g14680.t01	Wine grape	cytosol	58.16	21.65
EER93269	Sorghum	cytosol	56.46	20.67
TraesCS5A01G448400.1	Wheat	golgi	54.76	20.3
TraesCS5D01G455000.1	Wheat	cytosol	54.76	20.3
Zm00001d013059_P003	Maize	cytosol	55.78	19.9
Os03t0801600-01	Rice	cytosol	56.12	19.16
CDY24377	Canola	cytosol	51.02	19.04
CDY20826	Canola	cytosol	50.68	18.91
TraesCS5B01G453000.1	Wheat	cytosol	54.42	18.12
CDX73731	Canola	cytosol	47.62	17.72
CDX77995	Canola	cytosol	47.62	17.72
CDY59615	Canola	cytosol	47.28	17.44
CDX73208	Canola	cytosol	36.05	14.85
CDY13526	Canola	cytosol	3.4	8.33
GSMUA_Achr5P27230_001	Banana	cytosol	3.4	8.0
GSMUA_Achr3P01920_001	Banana	cytosol	1.36	4.82
KRH37553	Soybean	cytosol	0.34	0.86

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	GO:A0A078HMG1	UniProt:A0A078HMG1	EnsemblPlants:CDY39067	ProteinID:CDY39067
ProteinID:CDY39067.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	EnsemblPlantsGene:GSBRNA2T00067216001	PFAM:PF03635
PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI0004EE8D76	InterPro:Vps35	SEG:seg	:

Description

BnaA02g17560DBnaA02g17560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMG1]

Coordinates

chrLK032439:-:297558..298838

Molecular Weight (calculated)

33505.9 Da

IEP (calculated)

9.418

GRAVY (calculated)

0.013

Length

294 amino acids

Sequence
(BLAST)

001: MLNKFFFIVI TILRNLDLKL KLNFYIYRLY LRRGEVAGGR KSPESSTTLS SCIAPWSVAR FINSFLIIIS LLTEQFSITL SCFETLIRPQ VIVILSLLLM
101: SFSLEHLYYT EEEIADSKAQ VTAIHLIVRT LQRINVFGVE NRDTLTHKAT GYSARLLKKP DQCRAVYACS HLFSVDDLDG IKDGERALLC LRRALSIANA
201: AQQMANATRG SSGPVTLFVE ILNKYIYFYE KGNPRITPSD IQSLIELINT EMQSDNNGNT RTHSDPFFTS TLRYMRFQKQ KGGLMGDKYE LIKL

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.