CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39067	Canola	endoplasmic reticulum, golgi	92.31	28.57
CDY13527	Canola	mitochondrion	92.31	12.75
CDX87655	Canola	cytosol	97.8	11.24
AT1G75850.1	Thale cress	cytosol	85.71	9.87
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	65.93	8.55
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	72.53	8.34
KRH17452	Soybean	endoplasmic reticulum	72.53	8.28
KRH05971	Soybean	cytosol	72.53	8.27
PGSC0003DMT400075420	Potato	cytosol	70.33	8.09
EER93269	Sorghum	cytosol	65.93	7.47
VIT_18s0001g14680.t01	Wine grape	cytosol	64.84	7.47
Zm00001d013059_P003	Maize	cytosol	65.93	7.28
TraesCS5D01G455000.1	Wheat	cytosol	60.44	6.94
TraesCS5A01G448400.1	Wheat	golgi	60.44	6.94
Os03t0801600-01	Rice	cytosol	63.74	6.74
TraesCS5B01G453000.1	Wheat	cytosol	59.34	6.12
CDY24377	Canola	cytosol	51.65	5.96
CDY20826	Canola	cytosol	51.65	5.96
CDX77995	Canola	cytosol	50.55	5.82
CDX73731	Canola	cytosol	50.55	5.82
CDY59615	Canola	cytosol	50.55	5.77
GSMUA_Achr5P27230_001	Banana	cytosol	1.1	0.8
CDX73208	Canola	cytosol	1.1	0.14
KRH37553	Soybean	cytosol	0.0	0.0
GSMUA_Achr3P01920_001	Banana	cytosol	0.0	0.0
CDY13526	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73207	EnsemblPlantsGene:GSBRNA2T00103700001	Gene3D:1.25.40.660	GO:A0A078C8N0	GO:GO:0005575	GO:GO:0005623
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0030906	GO:GO:0042147
InterPro:Vps35	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	PFAM:PF03635	ProteinID:CDX73207	ProteinID:CDX73207.1
UniParc:UPI0004EEB8CE	MapMan:35.1	:	:	:	:

Description

BnaC06g36550D

Coordinates

chrLK031797:-:2686350..2686947

Molecular Weight (calculated)

10430.4 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.533

Length

91 amino acids

Sequence
(BLAST)

1: MANATRGSSG PVTLFVEILN KYIYFYEKGN PHITPSDLQS LIELINTEMQ SDDNGNRRTH SDPFFTSTLR YIRFQKQKGG LIGDKYDLIK L

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.