CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73207	Canola	cytosol	12.75	92.31
CDX87655	Canola	cytosol	94.69	78.79
AT1G75850.1	Thale cress	cytosol	92.56	77.22
CDX73208	Canola	cytosol	79.51	73.39
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	76.93	72.22
CDY39067	Canola	endoplasmic reticulum, golgi	30.65	68.71
VIT_18s0001g14680.t01	Wine grape	cytosol	80.42	67.09
KRH05971	Soybean	cytosol	79.67	65.79
KRH17452	Soybean	endoplasmic reticulum	79.36	65.62
Solyc12g089340.1.1	Tomato	cytosol, nucleus, plastid	77.69	64.73
PGSC0003DMT400075420	Potato	cytosol	77.24	64.35
EER93269	Sorghum	cytosol	76.78	63.01
KRH37553	Soybean	cytosol	11.08	62.93
TraesCS5D01G455000.1	Wheat	cytosol	74.96	62.3
TraesCS5A01G448400.1	Wheat	golgi	74.96	62.3
Zm00001d013059_P003	Maize	cytosol	76.33	61.04
Os03t0801600-01	Rice	cytosol	75.57	57.84
TraesCS5B01G453000.1	Wheat	cytosol	74.81	55.83
CDY24377	Canola	cytosol	66.46	55.58
CDY20826	Canola	cytosol	66.31	55.46
CDX73731	Canola	cytosol	65.25	54.43
CDX77995	Canola	cytosol	64.8	54.05
CDY59615	Canola	cytosol	64.49	53.33
GSMUA_Achr5P27230_001	Banana	cytosol	3.34	17.6
CDY13526	Canola	cytosol	0.76	4.17
GSMUA_Achr3P01920_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	GO:A0A078FKP0	UniProt:A0A078FKP0	InterPro:ARM-type_fold	EnsemblPlants:CDY13527
ProteinID:CDY13527	ProteinID:CDY13527.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147
EnsemblPlantsGene:GSBRNA2T00077848001	PFAM:PF03635	PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	SUPFAM:SSF48371
UniParc:UPI0004EE1259	InterPro:Vps35	SEG:seg	:	:	:

Description

BnaC02g23380DVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A078FKP0]

Coordinates

chrLK032036:+:27131..32013

Molecular Weight (calculated)

74417.1 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.120

Length

659 amino acids

Sequence
(BLAST)

001: MCRGVQHPIR GLFLRSYLAQ VSRDKLPEIG SDYQGDANTV MDAVEFVLQN FTEMNKLWVR IQHQGPGTVR EKQEKERNEL RDLVGKNLHV LGQIEGVHLE
101: MYKETVLPRI LEQVVNCKDD FAQYYLMECI IQVFPDEYHL QTLETLLAAC TQLMPTVDTK IVLTQLMDRL SNYAVSSPDV LHEFLQVEAF AKLNNAIGKV
201: IDTQIEMPIV GAMTLFVSLL TFALRVHPDR LDYVDQVLGA CVVKLSSGPK LEDARAMKQV VALLSAPLEK YNDKVTALTL SNYPRVMDHL DDGTNKVMAM
301: LIIQSIMKNN SCISTADKVE VLFEVIKGLI KDLDGNATEE LEEEDFQEEQ NSVARLINML DNEEPEEMLK IICVVRKHLM TGGTRRLPFT IPPLIFSALR
401: LVRQLESQGG DITGEDLPAT PRNIFQILNQ TIEVLSSVPC PELALRLYLQ CAEAASDCDL EPVAYEFFTQ AFILYEEEIA DSEAQVTAIH LIVGTLQRIN
501: VFGVENRDTL THKATGYSAR LLKKPDQCRA VYACSHLFWV DDLDGIKDGE RALLCLRRAL RIANAAQQMA NATRGSSGPV TLFVEILNKY IYVYEKGNPH
601: ITPSDIQSLI ELINTEMQSD NNGNTRTHSD PFFTSTLRYM RFQKQKGGLM GDKYELIKL

Best Arabidopsis Sequence Match ( AT1G75850.1 )
(BLAST)

001: MRTLAGVEDE DKWLAEGIAG IQHNAFFMHR ALDANNLREV LKYSALMLSE LRTSKLSPQK YYDLYMRAFD QLRQLEIFFK DESRHGLPVV DLYELVQHAG
101: NILPRMYLLC TVGSVYIKSK QAPSKDVLKD LVEMCRGVQH PIRGLFLRSY LAQVSRDKLP EIGSDYEGDA NTVMDAVEFV LQNFTEMNKL WVRIQHQGPG
201: TVREKQEKER NELRDLVGKN LHVLGQIEGV DLEMYKETVL PRVLEQVVNC KDKLAQYYLM ECIIQVFPDE YHLQTLETLL AACTQLMPTV DTKIVLTQLM
301: DRLSNYAASS PDVLHEFLQV EAFAKLSNAI GKVIDTQLEM PIVGAMTLFV SLLTFTLRVH PDRLDYVDQV LGACVVKLSS VPKLEDARAM KQVVALLSAP
401: LEKYSDIVTA LTLSNYPRVM DHLDDGTNKV MAMLIIQSIM KTDSCISTAD KVEVLFELIK GLIKDLDETN AEELDEEDFQ EEQNSVARLI HMLDNEEPEE
501: MLKIICVVRR HLMTGGPRRL PFTVPPLVFS AVRLVRQLES QGGDIAGEDS ATPRKIFQIL NQTIEVLTSV PCPELALRLY LQCAEAASDC DLEPVAYEFF
601: TQAFMLYEEE IADSKAQVTA IHLIVGTLQR INVFGVENRD TLTHKATGYS ARLLKKPDQC RAVYACSHLF WVDDPDGIKD GERVLLCLRR ALRIANAAQQ
701: MASATRGSSG PVTLFVEILN KYIYFFEKGN PHITPSDIQS LIELINNEMQ SDNGNTTIHS DPFFTSTLRY IKFIKQKGGL MGEKYDPIKL

Arabidopsis Description

VPS35BVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.