CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92167
CDX95816
CDY61284
CDY67567

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51310.1	CDX92167	AT3G17840.1	15618630
AT3G51310.1	CDX95816	AT3G17840.1	15618630
AT3G51310.1	CDY61284	AT3G17840.1	15618630
AT3G51310.1	CDY67567	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77995	Canola	cytosol	97.99	98.86
Bra036818.1-P	Field mustard	cytosol	97.99	98.49
CDX73731	Canola	cytosol	97.37	98.23
AT3G51310.1	Thale cress	cytosol	88.08	88.86
KRH76626	Soybean	endoplasmic reticulum	71.89	72.17
KRH28827	Soybean	cytosol, endoplasmic reticulum, nucleus	71.52	71.79
CDY20826	Canola	cytosol	69.13	69.92
CDY24377	Canola	cytosol	69.13	69.92
Solyc02g083560.2.1	Tomato	cytosol	68.51	69.11
PGSC0003DMT400009386	Potato	cytosol	68.38	68.99
Solyc03g033400.2.1	Tomato	cytosol, nucleus	68.0	68.61
PGSC0003DMT400058024	Potato	cytosol	68.0	68.61
VIT_04s0023g03870.t01	Wine grape	cytosol, mitochondrion	71.77	68.59
TraesCS5A01G448400.1	Wheat	golgi	68.0	68.35
EER93269	Sorghum	cytosol	68.76	68.24
TraesCS5D01G455000.1	Wheat	cytosol	67.88	68.22
Zm00001d034492_P006	Maize	endoplasmic reticulum, extracellular	59.6	67.66
Zm00001d013059_P003	Maize	cytosol	68.63	66.38
CDX87655	Canola	cytosol	64.87	65.28
CDX73208	Canola	cytosol	58.09	64.85
CDY13527	Canola	mitochondrion	53.33	64.49
Os03t0801600-01	Rice	cytosol	68.0	62.95
TraesCS5B01G453000.1	Wheat	cytosol	67.88	61.27
KRH15953	Soybean	cytosol	5.27	59.15
CDY13526	Canola	cytosol	7.78	51.67
CDX73207	Canola	cytosol	5.77	50.55
CDY39067	Canola	endoplasmic reticulum, golgi	17.44	47.28
HORVU7Hr1G081830.7	Barley	cytosol, endoplasmic reticulum, plastid	8.78	39.55

Protein Annotations

Gene3D:1.25.40.660	MapMan:22.5.5.3.1	GO:A0A078J5Q0	UniProt:A0A078J5Q0	EnsemblPlants:CDY59615	ProteinID:CDY59615
ProteinID:CDY59615.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0030904	GO:GO:0030906	GO:GO:0042147	EnsemblPlantsGene:GSBRNA2T00027483001	PFAM:PF03635
PIRSF:PIRSF009375	PANTHER:PTHR11099	PANTHER:PTHR11099:SF1	UniParc:UPI0004EEF1B8	InterPro:Vps35	SEG:seg

Description

BnaCnng35330DVacuolar protein sorting-associated protein 35 [Source:UniProtKB/TrEMBL;Acc:A0A078J5Q0]

Coordinates

chrLK033788:+:4516..9292

Molecular Weight (calculated)

90240.6 Da

IEP (calculated)

5.171

GRAVY (calculated)

-0.224

Length

797 amino acids

Sequence
(BLAST)

001: MIADDDEKWL AAATSAVKQN AFYMQRAIDS NNLKDALKFS AQMLGELRTS KLSPHKYYEL YIRASDELRS LEMFFRDETA RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVAA KDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS ELEGDTETHM DALEFVLQNF TEMNKLWVRM QHQGPTREKE
201: KREKERNELR DLVGKNLHIL GQLEGVDLVV YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVDAFS KLNHAIGKVV EAQVDLPASA SVTLYLFLLK FTLHVHSDRL DYVDQGFGIK PSEHGSCVSQ LSATGKLCDD KASKQIVAFL
401: SAPLEKFNDV VTILKLTNYP RVMEYLDHDT NKAMAIIIIQ SILKNNTRIA TADEVDALFE LIKGLIKDFD GLTDNDEIDE EDFQEEQNSV ARLVHFLYND
501: DPEEMSKIIF RIRKHILTGG PKRLPLTIPP LVLSALKLIR RMRGGDENPF GDDTSTPQKI LQLLTETVEV LSDASASELA LRLYLQCAQA ANDCELETVA
601: YEFFTKAYLL YEEEISDSKA QVTALRLIIG TLQRMRVFNV ENRDILTHKA TGYSVKLLKK PDQCRAVYEC AHLYWAEEGE NLKDGERVVL CLKRAQKIAD
701: AVQKMANASR GASSTGSVSL YVELLNKYLY FLEKGNPQVT GETIQSLAEL IRSETKKAES GAGTFITSTL RYMEFQRQQE DGGMSEKYQK IKMEWFE

Best Arabidopsis Sequence Match ( AT3G51310.1 )
(BLAST)

001: MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP
101: RLYLLCTIGS VYIKSKDVTA TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF TEMNKLWVRM QHQGPSREKE
201: KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301: NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY
401: NNVVTILKLT NYPLVMEYLD RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN LVARLVNKLY IDDPEEMSKI
501: IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601: YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN
701: ASRGTSSTGS VSLYVELLNK YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK YEKIKMEWFE

Arabidopsis Description

VPS35CVacuolar protein sorting-associated protein 35C [Source:UniProtKB/Swiss-Prot;Acc:A8R7K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.