Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051793_P001 | Maize | nucleus | 77.01 | 77.42 |
| Os02t0733400-00 | Rice | nucleus | 59.89 | 58.95 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 54.01 | 57.39 |
| TraesCS6D01G276000.1 | Wheat | nucleus | 53.48 | 56.18 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 53.48 | 56.18 |
| TraesCS6A01G295400.1 | Wheat | nucleus | 52.94 | 55.62 |
| EER88180 | Sorghum | nucleus | 54.55 | 47.22 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 37.43 | 37.43 |
| KRH41860 | Soybean | nucleus | 35.83 | 36.02 |
| KRH39052 | Soybean | nucleus | 35.29 | 34.55 |
| KRH48656 | Soybean | nucleus | 34.22 | 33.51 |
| PGSC0003DMT400014486 | Potato | nucleus | 35.29 | 32.35 |
| Solyc03g118630.2.1 | Tomato | nucleus | 34.76 | 32.34 |
| CDX95565 | Canola | nucleus, plastid | 34.76 | 30.95 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 34.76 | 30.66 |
| CDY51925 | Canola | nucleus | 33.16 | 30.1 |
| Bra001691.1-P | Field mustard | nucleus | 33.16 | 30.1 |
| CDX75951 | Canola | nucleus | 32.62 | 29.76 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 40.11 | 29.3 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 31.55 | 27.96 |
Protein Annotations
| EnsemblPlants:EES05571 | EnsemblPlantsGene:SORBI_3004G248000 | EntrezGene:8075750 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016627 | GO:GO:0050660 | GO:GO:0055114 |
| PANTHER:PTHR33544 | PANTHER:PTHR33544:SF5 | ProteinID:EES05571 | ProteinID:EES05571.1 | RefSeq:XP_002452595.1 | SEG:seg |
| UniParc:UPI0001A85515 | UniProt:C5XZA9 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:59532203..59533331
Molecular Weight (calculated)
20299.3 Da
IEP (calculated)
6.228
GRAVY (calculated)
-0.753
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADADMIPS SPSAETSPSS SDIATESTGS FFRDRSTTLG TLMGVSLADE EQEQGQDHHH HHHQSGQDAV DGTGTVTPRA PVHEDEGDGW RWRRRWRRRH
101: WRSAGGWWRL CRDDVRVPTS LGHFLDMERQ LSGTGLLCGG DGAGERDAAA AADETGRWKL RRPAQGTSSS LARLPVLLTA ICSGGAA
101: WRSAGGWWRL CRDDVRVPTS LGHFLDMERQ LSGTGLLCGG DGAGERDAAA AADETGRWKL RRPAQGTSSS LARLPVLLTA ICSGGAA
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.