Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014140.1-P | |
| Bra021277.1-P | |
| Bra022250.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G17950.1 | Bra014140.1-P | AT1G48480.1 | 15618630 |
| AT3G17950.1 | Bra021277.1-P | AT3G17840.1 | 15618630 |
| AT3G17950.1 | Bra022250.1-P | AT3G17840.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95565 | Canola | nucleus, plastid | 93.87 | 94.76 |
| Bra001691.1-P | Field mustard | nucleus | 80.66 | 83.01 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 76.89 | 77.25 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 48.58 | 55.08 |
| KRH41860 | Soybean | nucleus | 47.17 | 53.76 |
| KRH48656 | Soybean | nucleus | 46.7 | 51.83 |
| KRH39052 | Soybean | nucleus | 46.23 | 51.31 |
| PGSC0003DMT400014486 | Potato | nucleus | 48.11 | 50.0 |
| Solyc03g118630.2.1 | Tomato | nucleus | 47.17 | 49.75 |
| EER88180 | Sorghum | nucleus | 39.15 | 38.43 |
| Zm00001d037340_P001 | Maize | nucleus | 35.85 | 38.19 |
| TraesCS7B01G111600.1 | Wheat | nucleus | 35.85 | 38.19 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 35.38 | 38.07 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 31.13 | 37.5 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 31.13 | 37.08 |
| TraesCS6A01G295400.1 | Wheat | nucleus | 31.13 | 37.08 |
| TraesCS6D01G276000.1 | Wheat | nucleus | 31.13 | 37.08 |
| EES05571 | Sorghum | nucleus | 30.66 | 34.76 |
| Os02t0733400-00 | Rice | nucleus | 30.66 | 34.21 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 40.57 | 33.59 |
| Os06t0256800-01 | Rice | mitochondrion | 32.55 | 32.39 |
| Zm00001d051793_P001 | Maize | nucleus | 28.3 | 32.26 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 35.38 | 21.43 |
Protein Annotations
Description
AT3G17950 (E=8e-068) | unknown protein
Coordinates
chrA01:-:22770976..22771776
Molecular Weight (calculated)
23024.7 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.647
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPRNQVPP SPTISSVSSS DLDTESTGSF FHDRSITLGT LMGFSFTATM PMMPFRASSH RHVSPSISVS RATSSNATRR NLRKRPPPNS SERHRRRKWW
101: RFCRDDDDDD AGNGMHRGSA ECRRSSLGEY LEVERRSGDE AVYGSAEAEL EGAVARYREQ QPAAVGERAL FADGRVLPPA SAEVVSGEGT EAVTALCRFP
201: VSLTGICSGG GG
101: RFCRDDDDDD AGNGMHRGSA ECRRSSLGEY LEVERRSGDE AVYGSAEAEL EGAVARYREQ QPAAVGERAL FADGRVLPPA SAEVVSGEGT EAVTALCRFP
201: VSLTGICSGG GG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.