Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021286.1-P | Field mustard | nucleus, plastid | 94.76 | 93.87 |
| CDX75951 | Canola | nucleus | 84.76 | 86.83 |
| CDY51925 | Canola | nucleus | 84.29 | 85.92 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 78.57 | 78.2 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 48.57 | 54.55 |
| KRH41860 | Soybean | nucleus | 47.14 | 53.23 |
| KRH48656 | Soybean | nucleus | 47.14 | 51.83 |
| KRH39052 | Soybean | nucleus | 46.67 | 51.31 |
| PGSC0003DMT400014486 | Potato | nucleus | 48.1 | 49.51 |
| Solyc03g118630.2.1 | Tomato | nucleus | 47.14 | 49.25 |
| TraesCS7B01G111600.1 | Wheat | nucleus | 37.14 | 39.2 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 36.19 | 38.58 |
| EER88180 | Sorghum | nucleus | 39.52 | 38.43 |
| Zm00001d037340_P001 | Maize | nucleus | 36.19 | 38.19 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 31.43 | 37.5 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 31.43 | 37.08 |
| TraesCS6A01G295400.1 | Wheat | nucleus | 31.43 | 37.08 |
| TraesCS6D01G276000.1 | Wheat | nucleus | 31.43 | 37.08 |
| EES05571 | Sorghum | nucleus | 30.95 | 34.76 |
| Os02t0733400-00 | Rice | nucleus | 30.95 | 34.21 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 40.48 | 33.2 |
| Zm00001d051793_P001 | Maize | nucleus | 28.57 | 32.26 |
| Os06t0256800-01 | Rice | mitochondrion | 32.38 | 31.92 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 36.67 | 22.0 |
Protein Annotations
| EnsemblPlants:CDX95565 | EnsemblPlantsGene:GSBRNA2T00101416001 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF5 | ProteinID:CDX95565 | ProteinID:CDX95565.1 |
| SEG:seg | UniParc:UPI0004EDAFEE | MapMan:35.1 | : | : | : |
Description
BnaC01g34570D
Coordinates
chrLK031889:-:1275596..1276510
Molecular Weight (calculated)
22858.6 Da
IEP (calculated)
8.352
GRAVY (calculated)
-0.630
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPRNQVPP SPTISSVSSS DLDTESTGSF FHDRSITLGT LMGFSFTATM PMMPFRASSH RHVSPSISIS RATSSNATRR NLRKRPHPNS AERHRRRKWW
101: RFCRDDDDDA GNGMHRGSGE CRRSSLGEYL EVERRSGEEA VYGSAEAELE GAVARYREQQ PAVAERALFA DGRVLPPASA EVVSGEGTPA VTALCRFPVS
201: LTGICSGGGG
101: RFCRDDDDDA GNGMHRGSGE CRRSSLGEYL EVERRSGEEA VYGSAEAELE GAVARYREQQ PAVAERALFA DGRVLPPASA EVVSGEGTPA VTALCRFPVS
201: LTGICSGGGG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.