Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G207500.1 | Wheat | nucleus | 93.47 | 94.42 |
| Zm00001d037340_P001 | Maize | nucleus | 69.35 | 69.35 |
| EER88180 | Sorghum | nucleus | 73.37 | 67.59 |
| Os06t0256800-01 | Rice | mitochondrion | 66.83 | 62.44 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 95.98 | 54.57 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 47.74 | 53.98 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 42.21 | 44.92 |
| KRH41860 | Soybean | nucleus | 41.21 | 44.09 |
| KRH48656 | Soybean | nucleus | 39.2 | 40.84 |
| Solyc03g118630.2.1 | Tomato | nucleus | 40.7 | 40.3 |
| KRH39052 | Soybean | nucleus | 38.19 | 39.79 |
| PGSC0003DMT400014486 | Potato | nucleus | 40.2 | 39.22 |
| CDX95565 | Canola | nucleus, plastid | 39.2 | 37.14 |
| CDY51925 | Canola | nucleus | 37.69 | 36.41 |
| Bra001691.1-P | Field mustard | nucleus | 37.69 | 36.41 |
| CDX75951 | Canola | nucleus | 37.19 | 36.1 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 38.19 | 35.85 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 45.23 | 35.16 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 37.19 | 35.07 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G111600.1 | EnsemblPlantsGene:TraesCS7B01G111600 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF11 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7B:+:128302694..128303388
Molecular Weight (calculated)
21201.5 Da
IEP (calculated)
7.201
GRAVY (calculated)
-0.784
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDDDTIPY SPSGDSSPSS SDLDTESTGS FFPDRSTTLG TLMGVSSFGG AGVQRRLTRA APGQESERPT LAATEGQEGR RAGGWRRRRR RRGGSWWRLC
101: RDDASGPPTR LGEFLDMERQ HAGADFLCGG GGPQEPEAPS VAATPLFEDG RVRPPQQRAA PPEERGRWRL QRAAEGSSTS SSLARLPVLL TGICSGGAG
101: RDDASGPPTR LGEFLDMERQ HAGADFLCGG GGPQEPEAPS VAATPLFEDG RVRPPQQRAA PPEERGRWRL QRAAEGSSTS SSLARLPVLL TGICSGGAG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.