Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51925 | Canola | nucleus | 97.07 | 96.6 |
| CDX95565 | Canola | nucleus, plastid | 86.83 | 84.76 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 78.05 | 75.83 |
| KRH41860 | Soybean | nucleus | 49.27 | 54.3 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 48.78 | 53.48 |
| KRH48656 | Soybean | nucleus | 49.27 | 52.88 |
| KRH39052 | Soybean | nucleus | 48.78 | 52.36 |
| PGSC0003DMT400014486 | Potato | nucleus | 48.29 | 48.53 |
| Solyc03g118630.2.1 | Tomato | nucleus | 47.32 | 48.26 |
| EER88180 | Sorghum | nucleus | 40.0 | 37.96 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 36.1 | 37.56 |
| TraesCS7B01G111600.1 | Wheat | nucleus | 36.1 | 37.19 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 31.71 | 36.93 |
| Zm00001d037340_P001 | Maize | nucleus | 35.61 | 36.68 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 31.71 | 36.52 |
| TraesCS6A01G295400.1 | Wheat | nucleus | 31.71 | 36.52 |
| TraesCS6D01G276000.1 | Wheat | nucleus | 31.22 | 35.96 |
| Os02t0733400-00 | Rice | nucleus | 30.73 | 33.16 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 40.98 | 32.81 |
| EES05571 | Sorghum | nucleus | 29.76 | 32.62 |
| Zm00001d051793_P001 | Maize | nucleus | 28.29 | 31.18 |
| Os06t0256800-01 | Rice | mitochondrion | 31.71 | 30.52 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 36.1 | 21.14 |
Protein Annotations
| EnsemblPlants:CDX75951 | EnsemblPlantsGene:GSBRNA2T00123981001 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF5 | ProteinID:CDX75951 | ProteinID:CDX75951.1 |
| SEG:seg | UniParc:UPI0004EF4A0E | MapMan:35.1 | : | : | : |
Description
BnaC03g40340D
Coordinates
chrLK031805:+:2110816..2111786
Molecular Weight (calculated)
22292.9 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.601
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPRNHVPS SPTISSVSSS DLDTESTGSF FHDRSITLGT LMGLSFTATM PMMPFRASSH RHVSPSLTAS DATRLNQRKR PPSNSSERHR RRKWWRFCRD
101: DDDGPGNGLQ RGAGDCSRRS SLGEYLEVER RFGDEAVYGS AESELEGAVA RYREQQPAVA ERALFADGRV LPPASAEIVT GESTPVATAL CRFPVSLTGI
201: CSGGG
101: DDDGPGNGLQ RGAGDCSRRS SLGEYLEVER RFGDEAVYGS AESELEGAVA RYREQQPAVA ERALFADGRV LPPASAEIVT GESTPVATAL CRFPVSLTGI
201: CSGGG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.