Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41860 | Soybean | nucleus | 35.55 | 48.92 |
| KRH39052 | Soybean | nucleus | 35.55 | 47.64 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 34.77 | 47.59 |
| Zm00001d037340_P001 | Maize | nucleus | 35.16 | 45.23 |
| TraesCS7B01G111600.1 | Wheat | nucleus | 35.16 | 45.23 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 34.77 | 45.18 |
| TraesCS6D01G276000.1 | Wheat | nucleus | 31.25 | 44.94 |
| KRH48656 | Soybean | nucleus | 33.2 | 44.5 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 30.86 | 44.38 |
| TraesCS6A01G295400.1 | Wheat | nucleus | 30.86 | 44.38 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 30.47 | 44.32 |
| Solyc03g118630.2.1 | Tomato | nucleus | 34.77 | 44.28 |
| PGSC0003DMT400014486 | Potato | nucleus | 35.16 | 44.12 |
| EER88180 | Sorghum | nucleus | 36.72 | 43.52 |
| Os02t0733400-00 | Rice | nucleus | 31.64 | 42.63 |
| Bra001691.1-P | Field mustard | nucleus | 33.59 | 41.75 |
| CDY51925 | Canola | nucleus | 33.59 | 41.75 |
| CDX75951 | Canola | nucleus | 32.81 | 40.98 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 33.59 | 40.76 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 33.59 | 40.57 |
| CDX95565 | Canola | nucleus, plastid | 33.2 | 40.48 |
| Zm00001d051793_P001 | Maize | nucleus | 29.3 | 40.32 |
| EES05571 | Sorghum | nucleus | 29.3 | 40.11 |
| Os06t0256800-01 | Rice | mitochondrion | 31.64 | 38.03 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 39.06 | 28.57 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P27220_001 | EnsemblPlants:GSMUA_Achr9T27220_001 | EnsemblPlantsGene:GSMUA_Achr9G27220_001 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF5 | SEG:seg |
| UniParc:UPI0002950CCA | UniProt:M0U3X9 | MapMan:35.2 | : | : | : |
Description
Putative Uncharacterized protein At3g17950 [Source:GMGC_GENE;Acc:GSMUA_Achr9G27220_001]
Coordinates
chr9:-:31468685..31469536
Molecular Weight (calculated)
27499.5 Da
IEP (calculated)
11.565
GRAVY (calculated)
-0.533
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MQISPTAFGL LTALQGKWPL SQATARLFPS FRATLLSLLR RRPLSFFPPE EAFRQSDMDR DTDLFPSSPS NSSLSSSDLD TESTGSFFPD RSTTLGTLMG
101: VTFPEASASP ARLPSRRDHG LGGGGGAAGD AGRRTKPRAA ERRRRRHRGR SGWWRLCRDD MAGPTSLGEF LQVERRMAGV EVADGHYVFG GAAHGGGPPE
201: HVAVGGGPLF ADGRVLPPAP PAERRRPQQR QQQQRAESVG RLPVLLLTGI CSGGDG
101: VTFPEASASP ARLPSRRDHG LGGGGGAAGD AGRRTKPRAA ERRRRRHRGR SGWWRLCRDD MAGPTSLGEF LQVERRMAGV EVADGHYVFG GAAHGGGPPE
201: HVAVGGGPLF ADGRVLPPAP PAERRRPQQR QQQQRAESVG RLPVLLLTGI CSGGDG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.