Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0223000-02 | |
| Os03t0712400-02 | |
| Os04t0463000-01 | |
| Os08t0427600-00 | |
| Os09t0400500-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G111600.1 | Wheat | nucleus | 62.44 | 66.83 |
| EER88180 | Sorghum | nucleus | 66.67 | 65.74 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 59.62 | 64.47 |
| Zm00001d037340_P001 | Maize | nucleus | 57.28 | 61.31 |
| Os02t0733400-00 | Rice | nucleus | 44.6 | 50.0 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 61.97 | 37.71 |
| KRH41860 | Soybean | nucleus | 32.86 | 37.63 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 31.46 | 35.83 |
| KRH48656 | Soybean | nucleus | 31.46 | 35.08 |
| KRH39052 | Soybean | nucleus | 30.99 | 34.55 |
| PGSC0003DMT400014486 | Potato | nucleus | 31.46 | 32.84 |
| Solyc03g118630.2.1 | Tomato | nucleus | 30.99 | 32.84 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 32.39 | 32.55 |
| CDX95565 | Canola | nucleus, plastid | 31.92 | 32.38 |
| CDX75951 | Canola | nucleus | 30.52 | 31.71 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 38.03 | 31.64 |
| CDY51925 | Canola | nucleus | 30.52 | 31.55 |
| Bra001691.1-P | Field mustard | nucleus | 30.52 | 31.55 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 30.05 | 30.33 |
Protein Annotations
| EnsemblPlants:Os06t0256800-01 | EnsemblPlantsGene:Os06g0256800 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF11 | ProteinID:BAS97101.1 | SEG:seg |
| UniParc:UPI000393B6B3 | UniProt:A0A0P0WV67 | MapMan:35.2 | : | : | : |
Description
Hypothetical conserved gene. (Os06t0256800-01)
Coordinates
chr6:+:8176855..8177675
Molecular Weight (calculated)
22209.9 Da
IEP (calculated)
11.671
GRAVY (calculated)
-0.498
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: GGVCCFFFGF FGQSTGSFFP DRSTTLGTLM GVSAFGGGGQ RRAARTPART ERERAPLAAR PAGEEEEGRR AGGWRRRRRR RQRRGSRSLG GSWWRLCRDD
101: AGGPPTSLGE FLDMERQLAG ADFLCDGVGG GGSEREAAAA AAAAAAVSAT ALFEDGRVRP PQPQQPAAEE RGRWRLQRAT EGSSSSSSAG AAASSSLARL
201: PVLLTGICSG GAG
101: AGGPPTSLGE FLDMERQLAG ADFLCDGVGG GGSEREAAAA AAAAAAVSAT ALFEDGRVRP PQPQQPAAEE RGRWRLQRAT EGSSSSSSAG AAASSSLARL
201: PVLLTGICSG GAG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.