Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400036789 | |
| PGSC0003DMT400074103 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118630.2.1 | Tomato | nucleus | 95.59 | 97.01 |
| KRH41860 | Soybean | nucleus | 60.29 | 66.13 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 58.33 | 63.64 |
| KRH39052 | Soybean | nucleus | 58.33 | 62.3 |
| KRH48656 | Soybean | nucleus | 57.35 | 61.26 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 50.98 | 49.29 |
| Bra001691.1-P | Field mustard | nucleus | 49.51 | 49.03 |
| CDY51925 | Canola | nucleus | 49.51 | 49.03 |
| CDX75951 | Canola | nucleus | 48.53 | 48.29 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 50.0 | 48.11 |
| CDX95565 | Canola | nucleus, plastid | 49.51 | 48.1 |
| TraesCS7B01G111600.1 | Wheat | nucleus | 39.22 | 40.2 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 38.73 | 40.1 |
| Zm00001d037340_P001 | Maize | nucleus | 38.73 | 39.7 |
| Os02t0733400-00 | Rice | nucleus | 34.8 | 37.37 |
| EER88180 | Sorghum | nucleus | 38.73 | 36.57 |
| TraesCS6D01G276000.1 | Wheat | nucleus | 31.37 | 35.96 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 30.88 | 35.8 |
| Zm00001d051793_P001 | Maize | nucleus | 32.35 | 35.48 |
| TraesCS6A01G295400.1 | Wheat | nucleus | 30.88 | 35.39 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 30.88 | 35.39 |
| EES05571 | Sorghum | nucleus | 32.35 | 35.29 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 44.12 | 35.16 |
| Os06t0256800-01 | Rice | mitochondrion | 32.84 | 31.46 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 39.22 | 22.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014486 | EnsemblPlantsGene:PGSC0003DMG400005675 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF5 | PGSC:PGSC0003DMG400005675 | SEG:seg |
| UniParc:UPI0002963C3F | UniProt:M1A4B1 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005675]
Coordinates
chr3:-:58135763..58136896
Molecular Weight (calculated)
21743.4 Da
IEP (calculated)
5.398
GRAVY (calculated)
-0.373
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDPATDLVP PPSSPTISSV SSSDLDTEST GSFFHDRSIT LGTLMGVTFQ AITFRAPSMT QNRQSIVESS DGAGSTSRKN RKSKKSRVAA VEEEERRHCR
101: RRRWWRLCRD ECDSKPASLG EYLEVERRLG DGAFDGGAAA AAAELEGVVI DAQPTNGRTL FADGRVLPPV EVEEESSSAG ALGLCRFSVA SLSGICSRGA
201: GCVG
101: RRRWWRLCRD ECDSKPASLG EYLEVERRLG DGAFDGGAAA AAAELEGVVI DAQPTNGRTL FADGRVLPPV EVEEESSSAG ALGLCRFSVA SLSGICSRGA
201: GCVG
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.