Factsheet for VIT_17s0000g02120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g02010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17950.1	VIT_17s0000g02010.t01	AT1G48480.1	15618630
AT3G17950.1	VIT_17s0000g02010.t01	AT3G17840.1	15618630

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41860	Soybean	nucleus	63.64	63.98
KRH39052	Soybean	nucleus	65.24	63.87
KRH48656	Soybean	nucleus	60.96	59.69
PGSC0003DMT400014486	Potato	nucleus	63.64	58.33
Solyc03g118630.2.1	Tomato	nucleus	62.57	58.21
Bra001691.1-P	Field mustard	nucleus	54.55	49.51
CDY51925	Canola	nucleus	54.55	49.51
CDX75951	Canola	nucleus	53.48	48.78
Bra021286.1-P	Field mustard	nucleus, plastid	55.08	48.58
CDX95565	Canola	nucleus, plastid	54.55	48.57
AT3G17950.1	Thale cress	nucleus, plastid	54.01	47.87
TraesCS7B01G111600.1	Wheat	nucleus	44.92	42.21
TraesCS7D01G207500.1	Wheat	nucleus	44.38	42.13
Zm00001d037340_P001	Maize	nucleus	43.85	41.21
Os02t0733400-00	Rice	nucleus	41.18	40.53
TraesCS6D01G276000.1	Wheat	nucleus	37.43	39.33
TraesCS6A01G295400.1	Wheat	nucleus	36.9	38.76
TraesCS6B01G325500.1	Wheat	nucleus	36.36	38.64
EER88180	Sorghum	nucleus	44.38	38.43
HORVU6Hr1G073560.1	Barley	nucleus	36.36	38.2
EES05571	Sorghum	nucleus	37.43	37.43
Zm00001d051793_P001	Maize	nucleus	35.83	36.02
GSMUA_Achr9P27220_001	Banana	plastid	47.59	34.77
Os06t0256800-01	Rice	mitochondrion	35.83	31.46
TraesCS7A01G204400.1	Wheat	nucleus	43.32	23.14

Protein Annotations

ArrayExpress:VIT_17s0000g02120	EMBL:FN594950	EnsemblPlants:VIT_17s0000g02120.t01	EnsemblPlantsGene:VIT_17s0000g02120	EntrezGene:100257806	EntrezGene:LOC100257806
PANTHER:PTHR33544	PANTHER:PTHR33544:SF5	ProteinID:CBI15597	ProteinID:CBI15597.3	RefSeq:XP_002282848	RefSeq:XP_002282848.1
SEG:seg	TIGR:TC65306	unigene:Vvi.13379	UniParc:UPI00015C9A4A	UniProt:D7SJD6	wikigene:100257806
wikigene:LOC100257806	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr17:-:1717228..1718086

Molecular Weight (calculated)

19819.4 Da

IEP (calculated)

8.807

GRAVY (calculated)

-0.215

Length

187 amino acids

Sequence
(BLAST)

001: MLDPANDLIP PSSPTISSVS SSDLDTESTG SFFHDRSTSL GTLMGVSFPA ITFRAQSQHR EAQPVPAASG VAVAGRGGGG RKSRKVKKAL GLVAERRRRW
101: WRLCRDDAAK PASLGEFLEV ERRFGDVAFF GAAAELEGVV AQPENGRVLF ADGRVLPPPQ AEESPSTVSS LCRFPVSLTG IFSSSTG

Best Arabidopsis Sequence Match ( AT3G17950.1 )
(BLAST)

001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G

Arabidopsis Description

Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.