Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G276000.1 | Wheat | nucleus | 97.75 | 97.75 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 95.51 | 96.59 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 96.07 | 96.07 |
| Os02t0733400-00 | Rice | nucleus | 65.73 | 61.58 |
| Zm00001d051793_P001 | Maize | nucleus | 56.18 | 53.76 |
| EES05571 | Sorghum | nucleus | 55.62 | 52.94 |
| KRH41860 | Soybean | nucleus | 39.33 | 37.63 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 38.76 | 36.9 |
| KRH48656 | Soybean | nucleus | 39.33 | 36.65 |
| KRH39052 | Soybean | nucleus | 38.76 | 36.13 |
| CDY51925 | Canola | nucleus | 37.08 | 32.04 |
| Bra001691.1-P | Field mustard | nucleus | 37.08 | 32.04 |
| Solyc03g118630.2.1 | Tomato | nucleus | 35.96 | 31.84 |
| CDX75951 | Canola | nucleus | 36.52 | 31.71 |
| CDX95565 | Canola | nucleus, plastid | 37.08 | 31.43 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 37.08 | 31.13 |
| PGSC0003DMT400014486 | Potato | nucleus | 35.39 | 30.88 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 44.38 | 30.86 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 35.39 | 29.86 |
| TraesCS7A01G204400.1 | Wheat | nucleus | 53.37 | 27.14 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G295400.1 | EnsemblPlantsGene:TraesCS6A01G295400 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF11 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:529024998..529025614
Molecular Weight (calculated)
19254.3 Da
IEP (calculated)
5.043
GRAVY (calculated)
-0.578
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNDAGMIPS SPSAESSSSS SDIDTESTCS FFRDRSTTLG TLMGVSLADG EDRPPETQQA ADEQERPRAP APGEEGWTWC RRWRPRRGAS WWRLCRDDVG
101: GTTSLAHFLH MERQLSGDGG EVTVPLFENG RVLPSSSATA TAVVEDQRAK WKLRRSAQGS LSLARLPVLL TGICSGGA
101: GTTSLAHFLH MERQLSGDGG EVTVPLFENG RVLPSSSATA TAVVEDQRAK WKLRRSAQGS LSLARLPVLL TGICSGGA
001: MQDPHVPSSP TISSVSSSDL DTESTGSFFH DRSITLGTLM GFSFTATMPM PFRASSRRHV SPSVAISRAS SSNARRNHQR KRPPSNSAEP EPHRRRKWWR
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
101: FCRDDDDDAA GNGIHRGTGD SKRSSLGEYL EVERRFGDEA VYNSAEAELE DAVVARYQDQ QPVMGERALF ADGRVLPPAS AEVVTGEGTP VATSLCRFPV
201: SLTGICSGGG G
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.