Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G295400.1 | Wheat | nucleus | 97.75 | 97.75 |
| HORVU6Hr1G073560.1 | Barley | nucleus | 96.07 | 96.07 |
| TraesCS6B01G325500.1 | Wheat | nucleus | 94.94 | 96.02 |
| Os02t0733400-00 | Rice | nucleus | 65.73 | 61.58 |
| Zm00001d051793_P001 | Maize | nucleus | 57.3 | 54.84 |
| EES05571 | Sorghum | nucleus | 56.18 | 53.48 |
| TraesCS7D01G207500.1 | Wheat | nucleus | 52.81 | 47.72 |
| KRH41860 | Soybean | nucleus | 39.89 | 38.17 |
| VIT_17s0000g02120.t01 | Wine grape | nucleus | 39.33 | 37.43 |
| KRH48656 | Soybean | nucleus | 39.33 | 36.65 |
| KRH39052 | Soybean | nucleus | 38.76 | 36.13 |
| Solyc03g118630.2.1 | Tomato | nucleus | 36.52 | 32.34 |
| CDY51925 | Canola | nucleus | 36.52 | 31.55 |
| Bra001691.1-P | Field mustard | nucleus | 36.52 | 31.55 |
| CDX95565 | Canola | nucleus, plastid | 37.08 | 31.43 |
| PGSC0003DMT400014486 | Potato | nucleus | 35.96 | 31.37 |
| GSMUA_Achr9P27220_001 | Banana | plastid | 44.94 | 31.25 |
| CDX75951 | Canola | nucleus | 35.96 | 31.22 |
| Bra021286.1-P | Field mustard | nucleus, plastid | 37.08 | 31.13 |
| AT3G17950.1 | Thale cress | nucleus, plastid | 35.39 | 29.86 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G276000.1 | EnsemblPlantsGene:TraesCS6D01G276000 | PANTHER:PTHR33544 | PANTHER:PTHR33544:SF11 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6D:-:384444660..384445588
Molecular Weight (calculated)
19277.3 Da
IEP (calculated)
5.332
GRAVY (calculated)
-0.615
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNDAGMIPS SPSAESSSSS SDIDTESTCS FFRDRSTTLG TLMGVSLADG EDRPPETQQA AGEQERPREP APGEEGWTWR RRWRPRRGAS WWRLCRDDVG
101: GTTSLAHFLH MERQLSGDGG EVTVPLFENG RVLPSSSATA AAVVEDQRAK WKLRRSAQGS LSLARLPVLL TGICSGGA
101: GTTSLAHFLH MERQLSGDGG EVTVPLFENG RVLPSSSATA AAVVEDQRAK WKLRRSAQGS LSLARLPVLL TGICSGGA
001: MSHLLQLSPP SLPPILILRS ITLGTLMGFS FTATMPMPFR ASSRRHVSPS VAISRASSSN ARRNHQRKRP PSNSAEPEPH RRRKWWRFCR DDDDDAAGNG
101: IHRGTGDSKR SSLGEYLEVE RRFGDEAVYN SAEAELEDAV VARYQDQQPV MGERALFADG RVLPPASAEV VTGEGTPVAT SLCRFPVSLT GICSGGGG
101: IHRGTGDSKR SSLGEYLEVE RRFGDEAVYN SAEAELEDAV VARYQDQQPV MGERALFADG RVLPPASAEV VTGEGTPVAT SLCRFPVSLT GICSGGGG
Arabidopsis Description
Y-3Uncharacterized protein At3g17950 [Source:UniProtKB/Swiss-Prot;Acc:Q6DR24]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.