Factsheet for VIT_18s0001g10070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71536	Canola	cytosol	29.76	66.78
CDY22372	Canola	cytosol	29.76	66.78
Bra033656.1-P	Field mustard	cytosol	29.61	66.44
Solyc04g078590.2.1	Tomato	plasma membrane	63.14	62.57
PGSC0003DMT400020520	Potato	plasma membrane	62.84	62.0
VIT_07s0031g00120.t01	Wine grape	plasma membrane	60.57	59.76
AT5G43020.1	Thale cress	plasma membrane	59.37	58.74
KRH61335	Soybean	plasma membrane	63.9	58.1
GSMUA_Achr4P09880_001	Banana	plasma membrane	52.72	57.78
KRH52034	Soybean	cytosol, plasma membrane, plastid	44.11	56.05
GSMUA_Achr7P20790_001	Banana	plasma membrane	48.49	54.68
CDX71537	Canola	extracellular	22.81	52.98
GSMUA_Achr10P...	Banana	golgi, plasma membrane	47.58	48.99
GSMUA_Achr9P25250_001	Banana	plastid	45.77	46.9
TraesCS2D01G513900.1	Wheat	plasma membrane	49.09	46.43
TraesCS2B01G540400.2	Wheat	plasma membrane	49.09	46.43
KXG27266	Sorghum	plasma membrane	49.09	46.36
Zm00001d002068_P001	Maize	plasma membrane	48.94	46.22
TraesCS2A01G512500.1	Wheat	plasma membrane	49.24	46.18
Os04t0649700-01	Rice	plasma membrane	48.64	45.35
HORVU2Hr1G113540.1	Barley	plastid	41.09	44.74
VIT_01s0010g01660.t01	Wine grape	plasma membrane	42.75	43.34
VIT_01s0011g03860.t01	Wine grape	plasma membrane	37.46	36.96
VIT_11s0016g04570.t01	Wine grape	plasma membrane	33.69	34.15
VIT_06s0004g08210.t01	Wine grape	plasma membrane	32.78	34.07
VIT_04s0008g01220.t01	Wine grape	plasma membrane	30.82	33.55
VIT_01s0011g05580.t01	Wine grape	plasma membrane	29.76	33.0
VIT_08s0007g04150.t01	Wine grape	plasma membrane	33.53	32.5
VIT_08s0040g00060.t01	Wine grape	plasma membrane	30.51	31.86
VIT_14s0006g01080.t01	Wine grape	plasma membrane	30.66	31.77
VIT_16s0050g02430.t01	Wine grape	plasma membrane	29.0	30.57
VIT_17s0000g02010.t01	Wine grape	plasma membrane	30.82	30.36
VIT_02s0025g01040.t01	Wine grape	plasma membrane	28.25	29.78

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100250658	wikigene:100250658	MapMan:18.4.1.3	Gene3D:3.30.200.20	Gene3D:3.80.10.10
UniProt:A5B6X8	EMBL:AM448784	ProteinID:CAN61022	ProteinID:CAN61022.1	ProteinID:CCB45811	ProteinID:CCB45811.1
EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100250658
wikigene:LOC100250658	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF00069	PFAM:PF13855	PIRSF:PIRSF000654
PFscan:PS50011	PANTHER:PTHR27008	PANTHER:PTHR27008:SF1	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001520326	ArrayExpress:VIT_18s0001g10070	EnsemblPlantsGene:VIT_18s0001g10070	EnsemblPlants:VIT_18s0001g10070.t01
RefSeq:XP_003634438	RefSeq:XP_003634438.1	RefSeq:XP_010664553.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:8418530..8421561

Molecular Weight (calculated)

72593.4 Da

IEP (calculated)

6.937

GRAVY (calculated)

-0.089

Length

662 amino acids

Sequence
(BLAST)

001: MLNTTQSLAP CLFILSVAFL TASSTAATHP PHAVSPSPSP TLPPSDAIAL VMFKSKADLG NKLRFTASTS LNYCYWQGVT CLRGKVVRLV LEGLDLGGVF
101: GPDTLSRLDQ LRVLSLQNNS LVGPIPDLSK FFNLKALFLD HNSFTGSFPP SISSLHRLRT LDFSYNNLTG PLPIWLTKLD RLYYLRLESN RFNGTIPPLN
201: QSTLQTFNVS RNNLFGAIPV TPTLLHFEAS AFALNPGLCG EILHKECHPS QPFFSPSAPV ATPPPPVGLG QNEQVHGVEL AQPCPKNHKR TVVILGFSSG
301: VFVLISSLLC FVIAMKRQRN QRNTAPTMAS DSAATAQAAA VMRIEEENEL EEKVKKVQGM QVAKSGSLVF CAGEAQLYTL EQLMRASAEL LGRGSIGTTY
401: KAVLDNRLIV SVKRLDAGKT AITDKETYER HMESVGGLRH PNLVPLRAYF QAQEERLLIY DYQPNGSLFS LIHGSKSTRA KPLHWTSCLK IAEDVAQGLS
501: YIHQAWRLVH GNLKSSNVLL GPDFEACLTD YCLAVLASPS VDDDLDSASY KAPETRNPSG QATSKADVYA FGILLLELLT GKPPSQHPVL MPDDMMNWVR
601: STRDDDDGED NRMGMLLEVA IACSVTSPEQ RPTMWQVLKM IQEIKESVLM EDNELDPLTG LS

Best Arabidopsis Sequence Match ( AT5G43020.1 )
(BLAST)

001: MLLRCNLPIS GFLLFCFLFT IVASSSSSSN HTKRVFHSHR DVSALLRFKS KADLWNKINT SSHFCQWWGV TCYGNRVVRL VIEDLYLGGR LIPDSVNKLD
101: QLRVLSLKNT SLTGPLPDFS GLVNLKSLFL DHNSFSGSFP LSVLAFHRLR TLDFSFNNLT GPIPSGLVLS DRLIYLRLDS NRFNGPVPPL NQSTLHTFNV
201: SVNNLTGAVP VTTVLLRFGI SSFLKNPNLC GEIVHKECNP RAKFFTPVTA APSPKMVLGQ IAQIGGARLS RPSQNKHSRF FVILGFISGA FILFISVACL
301: IGAVKRRRSK TEKQKGKEST AVVTFDAAET AEVAAAIEQE SEIEEKVKKL QATKSGSLVF CAGEAHVYTM DQLMTASAEL LGRGTVGTTY KALLDSRLIV
401: TVKRLDAIRL AGVGRDKFEH HMESVGALGH PNLVPLRAYF QAKEERLLIY DYLPNGSLSS LVHGTKSSRA TPLHWTSCLK IAEDVAQGLS YIHQAWQLVH
501: GNLKSSNVLL GQDFEACIAD YCLVALATNP PLTSNDGQED ADAAAYKPPE ARHKSLNYQS VKADVYSFGI LLLELLTGKQ PSKIPVLPLD EMIEWVRKVR
601: EEGEKKNGNW REDRDKFGML TEVAVACSLA SPEQRPTMWQ VLKMLQEIKE AAVMEECELV MDSANSESS

Arabidopsis Description

Leucine-rich repeat protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FMI2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.