Factsheet for PGSC0003DMT400026504

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400069515
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18630.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT4G18630.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT4G18630.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT4G18630.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT4G18630.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT4G18630.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT4G18630.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT4G18630.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT4G18630.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT4G18630.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT4G18630.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g076680.2.1	Tomato	nucleus	95.82	95.68
VIT_10s0003g01370.t01	Wine grape	plastid	38.47	33.71
KRH11026	Soybean	nucleus	29.97	30.72
KRH42875	Soybean	nucleus	29.83	30.67
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	21.33	30.45
CDX94655	Canola	mitochondrion	21.33	30.45
CDY15640	Canola	mitochondrion, nucleus, plastid	19.88	30.26
KRH58978	Soybean	nucleus	28.96	30.04
AT2G34170.3	Thale cress	nucleus	22.48	29.83
Bra010842.1-P	Field mustard	nucleus	22.05	29.31
CDX90178	Canola	nucleus	21.18	28.88
CDY43328	Canola	nucleus	20.89	28.38
CDY17227	Canola	nucleus	19.88	28.16
PGSC0003DMT400052652	Potato	nucleus	23.78	28.06
KRH21261	Soybean	cytosol, mitochondrion, plastid	15.99	28.03
CDY63140	Canola	nucleus	19.74	28.02
GSMUA_Achr1P04800_001	Banana	nucleus	20.89	27.83
AT1G29240.1	Thale cress	nucleus	23.05	27.73
Bra021994.1-P	Field mustard	nucleus	15.85	26.76
Bra005448.1-P	Field mustard	nucleus	19.74	26.0
CDX99449	Canola	nucleus	17.29	25.42
CDY06031	Canola	nucleus	15.99	25.4
AT4G18630.1	Thale cress	nucleus	17.44	25.26
GSMUA_Achr6P26820_001	Banana	nucleus	23.49	24.85
AT5G45850.1	Thale cress	nucleus	15.85	24.72
PGSC0003DMT400039770	Potato	cytosol	20.32	24.61
GSMUA_Achr9P06400_001	Banana	nucleus	23.34	24.36
CDX78880	Canola	nucleus	16.71	24.32
Bra013335.1-P	Field mustard	nucleus	16.57	24.21
CDX87761	Canola	nucleus	14.99	24.02
CDY01559	Canola	nucleus, plastid	15.42	23.99
Bra012583.1-P	Field mustard	plastid	15.56	23.89
TraesCS3D01G295500.1	Wheat	nucleus	21.61	22.16
CDY53997	Canola	plastid	13.26	21.85
TraesCS3A01G306400.2	Wheat	nucleus	21.9	21.59
Os01t0758900-01	Rice	nucleus	20.61	20.97
Zm00001d043395_P002	Maize	nucleus	20.32	20.74
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	20.89	20.34
EES01501	Sorghum	nucleus	20.03	20.2

Protein Annotations

EnsemblPlants:PGSC0003DMT400026504	EnsemblPlantsGene:PGSC0003DMG400010231	EntrezGene:102585343	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3
PFAM:PF05097	PGSC:PGSC0003DMG400010231	RefSeq:XP_006362390.1	RefSeq:XP_006362391.1	SEG:seg	UniParc:UPI000294DDBA
UniProt:M1AN90	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010231]

Coordinates

chr2:-:32040629..32044685

Molecular Weight (calculated)

76992.3 Da

IEP (calculated)

9.843

GRAVY (calculated)

-0.699

Length

694 amino acids

Sequence
(BLAST)

001: MAKKQLDFNA PLLSVRKIAS SLTPNERANK KMADKVPPNR QQSLPVKKSD WELTEVTKPV AVPFVWEQIP GRPKDDIEVR TSLRVERSSS PRLPPGRLPE
101: TVRFYSGERP RTHNIYRSPA EGLPWMDHAA LLDSLVESIY TRGDRESEDG AYSDGPETMS PTESLSLNCS VSGLSGHQTS DLQPSGTFSI DSQTRDFMMS
201: RFLPAAKAVV LETPQYVHKK PVSAEQPMPV KKLVPVERKP LVKPLESNPV SYYSSHPADV GSETEDDVPE NPDKKPSKGW RFFPRICVKN SLCLLNPLPG
301: LKVKTRAPTP SPQAVKRVSG TKPKMAQSPT SYAHEVKKLT RKAYSGPLEK NACDTINKQR FHSGVLSREL YKADNRSMSG QLSNPNDSCK LVGISPGRRS
401: RSGAISPYRN VAPPSPFNEG TRFLGVPKEM ESLWASRFDS FRKGCYTVKD KAVPQRMGTG KFFDSPSEVV EKTLYIDSVD NVQISAPNAA SLKPKGIVNS
501: PDKIMKTLVE NRKVVENLAA MSPIQGARRS DVLEKNSKQI VEKESSLDLI EASTISISTH KGPADQEFLK LEQNVDTVSG ALESSKVHPC GNLVTENEDN
601: QNAKDSKDSN LTSLESTLPP PLPKSPSESW LWRTLPSIPL RTPFLSFNSK KQNQKSQTDG TKWETIVKTS NLHKDHVRYS EELYTLGSCQ QSKS

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.