Factsheet for Bra010842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29240.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G29240.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G29240.1	Bra014481.1-P	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90178	Canola	nucleus	85.63	87.82
CDY43328	Canola	nucleus	82.76	84.54
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	62.64	67.28
AT1G29240.1	Thale cress	nucleus	64.94	58.75
Bra005448.1-P	Field mustard	nucleus	43.3	42.88
Bra021994.1-P	Field mustard	nucleus	21.65	27.49
Bra013335.1-P	Field mustard	nucleus	24.33	26.74
Bra012583.1-P	Field mustard	plastid	22.8	26.33
KRH58978	Soybean	nucleus	32.38	25.26
KRH11026	Soybean	nucleus	31.8	24.52
KRH42875	Soybean	nucleus	31.61	24.44
Solyc02g076680.2.1	Tomato	nucleus	29.69	22.3
PGSC0003DMT400026504	Potato	nucleus	29.31	22.05
GSMUA_Achr1P04800_001	Banana	nucleus	21.84	21.88
KRH21261	Soybean	cytosol, mitochondrion, plastid	16.28	21.46
Bra021686.1-P	Field mustard	nucleus	21.65	21.12
VIT_10s0003g01370.t01	Wine grape	plastid	31.03	20.45
GSMUA_Achr9P06400_001	Banana	nucleus	24.33	19.1
GSMUA_Achr6P26820_001	Banana	nucleus	23.75	18.9
Os01t0758900-01	Rice	nucleus	23.95	18.33
TraesCS3D01G295500.1	Wheat	nucleus	23.56	18.17
Bra018284.1-P	Field mustard	nucleus	16.48	17.7
TraesCS3A01G306400.2	Wheat	nucleus	23.56	17.47
EES01501	Sorghum	nucleus	22.99	17.44
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	23.75	17.39
Zm00001d043395_P002	Maize	nucleus	22.61	17.35

Protein Annotations

EnsemblPlants:Bra010842.1	EnsemblPlants:Bra010842.1-P	EnsemblPlantsGene:Bra010842	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3
PFAM:PF05097	SEG:seg	UniParc:UPI00025454B3	UniProt:M4D2Y9	MapMan:35.2	:

Description

AT1G29240 (E=1e-172) | unknown protein

Coordinates

chrA08:-:16750049..16752028

Molecular Weight (calculated)

59084.4 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.798

Length

522 amino acids

Sequence
(BLAST)

001: MAERKLNLEA PLLSTRRMQK TSAVSVRRNK TFDFTQDDTS SVPVLVPDMG LDHFTESSSV PFTWEQAPGR LKGNDSTTPQ EVFTPCLPPG KAIDRNLSSK
101: TKQVDEEEEE SEDVFSDARD TLSPKDSFSV KNSISGVSGY GVVTEMKKTL NPCEDPQSRD FMLNRFLPAA KAMTVEQSHY ALNRKPSSCM SEPTLQIREL
201: VPEEKRQTFK RYDESLVLPY YDHQYIDDEE SNEDDGEVSE YAYLPRRGCG MLPQLCFKES LGMLNTVPGF KTKHKSFPSH DQVKSSKVSQ LKSRFQSVKK
301: LALVSVSKQK LSGKVQSPVH PSIGKKFNSE TNLPCSASRS SSPYRHPRCM SPFRTANATC FPDTRKETEN LRANRLNKHI RNISSSQELL YSKDNGSTSS
401: LSEKIVYVET NISPKSNVMI FPEEAEKKPD TNLELEDFEN ISIKSGKDRS PLAPPSPKKP SESWLWHNLP SVNSQIPSRG YRFNPQNQDV SVSKWETIVK
501: TSYMHRDHIR FSEELVAHTS LQ

Best Arabidopsis Sequence Match ( AT1G29240.1 )
(BLAST)

001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT

Arabidopsis Description

F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.